Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27620 343 / 6e-118 unknown protein AT4G27610 343 / 2e-117 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034127 [exp] 647 / 0 AT4G27610 330 / 7e-111 unknown protein Lus10028872 [exp] 508 / 0 AT4G27620 337 / 3e-115 unknown protein Lus10008948 [exp] 498 / 1e-178 AT4G27620 333 / 6e-114 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G042700 [exp] 478 / 7e-171 AT4G27610 403 / 2e-141 unknown protein Potri.013G076900 [exp] 474 / 5e-169 AT4G27610 339 / 5e-116 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043458 pacid=23167935 polypeptide=Lus10043458 locus=Lus10043458.g ID=Lus10043458.BGIv1.0 annot-version=v1.0 ATGAGACCGAGACCGGATGGGATTGGTAGGGGTCAGAGGGAGGAAAGGTTTCAAAGTGGGGGACCAAATTGGATTCTCATAGCAGGAGGTGCCTTGTTAA GTACATTGTCTATCCGCCTTGGCTGCAAGCTGAAGCAGACCTTCGATTCTAGGAAGGAAGCAAATGCTAGGAAGGAGAAATCCCCTGACAGAAGGAGCTC CCCTGGCCGTCATATGCGTTCTAATATGTACTCCTTTTCACATGACGATGATATTTGCTTCAACCAGGTTTCCGGTATGGAGATTCGGAACGAAAGCATC ACTGAAGTGAAATACCCCCCTAATGATCACATGTCTGAAAATGATGGTGCTCTGCCTTTAGTCACGGTCAACGCCCCAGAATACTCAAGAGAGAATGGTG CTATGTGGGCTTCATCACTTGATCGTCTCGAGTTGCCTCCAAAACCATTTTACCATTCAAACTGCTCTGACTCGCCTTGCGTCTCTGAGTCTGGTTCAGA GATCCTTACTAAGCGAGATGTGATTCAGAAGCTGAGACAACAACTGAAAAGACGGGATGACATGATAATTGAGATGCAGGATCAGATCATGGAGTTGCAG AATTCAATCAATTGTCAGCTGGCGATTTCAACTAGTTTACAGTCTCAGGTTGATGCTGCTAACAATGATTTGCTAAATTCTGAGAGAGAAATCCAGAGGC TGAGGAAGGCCATTGCAGATAACTGTTTGAAACATGCAAACGGAGATGGAAAACCTTCCGTTATCACTGCATGGCCACTTGAGGTAAGAAATGGACATAC AAATGGGTATTGTGATGGTGACAGCACGTTTGAGTTTGCAGAGAAGGGAAGGATTGATGTGGATAAGGTGGAGATGCTTAGGAGGGAAGTAGGAGAGTTA AAGGAAGTTTTGGAAGGGAAGGAATACTTGCTACAGAGCTACAAGGAGCAGAAATCAGAACTCTCCATGAAGATCAAGGAGTTACAGCAAAGATTGGATT CTCAGCTGCCTAATATTTTGTAG
AA sequence Show only first row Show all	>Lus10043458 pacid=23167935 polypeptide=Lus10043458 locus=Lus10043458.g ID=Lus10043458.BGIv1.0 annot-version=v1.0 MRPRPDGIGRGQREERFQSGGPNWILIAGGALLSTLSIRLGCKLKQTFDSRKEANARKEKSPDRRSSPGRHMRSNMYSFSHDDDICFNQVSGMEIRNESI TEVKYPPNDHMSENDGALPLVTVNAPEYSRENGAMWASSLDRLELPPKPFYHSNCSDSPCVSESGSEILTKRDVIQKLRQQLKRRDDMIIEMQDQIMELQ NSINCQLAISTSLQSQVDAANNDLLNSEREIQRLRKAIADNCLKHANGDGKPSVITAWPLEVRNGHTNGYCDGDSTFEFAEKGRIDVDKVEMLRREVGEL KEVLEGKEYLLQSYKEQKSELSMKIKELQQRLDSQLPNIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27610			unknown protein		Lus10043458 [exp]	0	1
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10040415 [exp]	2.8	0.8949
AT5G06370			NC domain-containing protein-r...		Lus10004198 [exp]	4.6	0.8876
AT1G65230			Uncharacterized conserved prot...		Lus10027002 [exp]	4.8	0.9052
AT2G15220			Plant basic secretory protein ...		Lus10026580 [exp]	5.3	0.8765
AT5G49320			Protein of unknown function (D...		Lus10016851 [exp]	7.7	0.8309
AT3G53810			Concanavalin A-like lectin pro...		Lus10016507 [exp]	7.7	0.8718
AT2G45080		CYCP3;1	cyclin p3;1 (.1)		Lus10028174 [exp]	9.4	0.8692
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Lus10018337 [exp]	11.8	0.8864
AT4G38225			unknown protein		Lus10026560 [exp]	11.8	0.8864
AT5G49320			Protein of unknown function (D...		Lus10037723 [exp]	13.4	0.8719

Compare expression of checked genes

Lus10043458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.