Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04895 1818 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT1G48650 1329 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT2G01130 1263 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT2G35920 827 / 0 RNA helicase family protein (.1) AT1G58060 492 / 8e-152 RNA helicase family protein (.1) AT1G58050 451 / 5e-137 RNA helicase family protein (.1) AT1G06670 274 / 3e-75 NIH nuclear DEIH-boxhelicase (.1) AT2G30800 271 / 1e-74 ATVT-1, HVT1 helicase in vascular tissue and tapetum (.1) AT4G18465 244 / 2e-68 RNA helicase family protein (.1) AT1G32490 187 / 3e-48 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034126 [exp] 2228 / 0 AT5G04895 1904 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10007938 [exp] 1282 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10013479 [exp] 1278 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009012 [exp] 1274 / 0 AT1G48650 1644 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10009643 [exp] 1157 / 0 AT1G48650 1469 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10009022 [exp] 762 / 0 AT2G35920 1447 / 0.0 RNA helicase family protein (.1) Lus10009660 [exp] 543 / 3e-177 AT2G35920 969 / 0.0 RNA helicase family protein (.1) Lus10001415 [exp] 290 / 2e-81 AT2G30800 1276 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10029806 [exp] 280 / 6e-78 AT2G30800 1250 / 0.0 helicase in vascular tissue and tapetum (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G014100 [exp] 1894 / 0 AT5G04895 1835 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G246000 [exp] 1886 / 0 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G042500 [exp] 1337 / 0 AT1G48650 1629 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Potri.010G117800 [exp] 1321 / 0 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G068900 [exp] 837 / 0 AT2G35920 1474 / 0.0 RNA helicase family protein (.1) Potri.004G222900 [exp] 496 / 1e-153 AT1G58060 1757 / 0.0 RNA helicase family protein (.1) Potri.005G206500 [exp] 284 / 3e-79 AT2G30800 1374 / 0.0 helicase in vascular tissue and tapetum (.1) Potri.010G172500 [exp] 253 / 6e-69 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.004G052700 [exp] 225 / 5e-62 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.010G057200 [exp] 208 / 4e-56 AT1G27900 1077 / 0.0 RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10043459 pacid=23168024 polypeptide=Lus10043459 locus=Lus10043459.g ID=Lus10043459.BGIv1.0 annot-version=v1.0 ATGCGGAATCCCAAGCTACGTAGCTTACTCGTGGGATATAGCAGCTCGCTCTACAAACTTCATCGTCCACAACCTTGCTCCAGGCCTCTATATGCCAGCT TGCTTTTCTTCCTCCCTAATCCTTCCTTATATAATAATAACTTCAGTTCTCTCCGTCGATTCTCTGGCTACGCCGTCGAGCAATTCTCCGATGACGAGTA CGAGTGCGACTTCGAGAATCACAAGGCATCTTCTTCGGTGGCCAATATCGATGAGTGGAAATGGAAAATGAGCTTGCTCCTACGCAGTGAGACTGACCAA GAGATTGTTTCCAAAGACAGGAAAGATAGGAGGGACTATGAGCAGATATCCAATCTTGCTCAAAGGATGGGACTTTATAGTGAATTGTATGGGAAAGTGG TGGTTGCAAGCAAGGTTCCTCTTCCGAACTACAGGCCTGATTTAGATGACAAGCGGCCGCAAAGAGAGGTGGTTCTCCCTCTAAGCCTGAGGAGGAGGGT GGAGAGTTTGCTTCAGGAACATCTTGACAGGACTCAACTTACCTCTGGAAAAGCAGATGGTATTACAGATGACACGCCTGCTGATCATGTTGAGATTCAT AATCAAGCGGAAAATCCTAATTCTTTTATTGACGACTCTGTGGTGGAGAAAGTTCTTCAAAGGAGGAGTTTACGGTTGCGAAATATGCAGAGAGCTTGGC AGGAATCCCCTGAAGGCAGGAGGATGTTGGAATTCCGGAAGTCCCTACCTTCCTTTAAGGAAAAAGAAAGATTGTTACAAGCTATAGCAAGGAATCAGGT GGTAGTAATATCAGGGGAAACTGGATGTGGGAAAACCACTCAGCTTCCGCAATACATATTGGAGTCTGAAATAGAGTCCGGCCGTGGAGCATTTTGTAGT ATAATCTGCACACAGCCGAGGAGGATATCAGCTATGGCTGTTTCCGAGAGAGTATCAACAGAGAGAGGAGAGCCTCTTGGTGAATCGGTTGGTTATAAAG TTCGGCTGGAAGGTATGAAAGGGAAAAACACCCACCTGCTCTTCTGTACTAGTGGAATTCTACTTCGGAGGCTGCTAAGTGACCGCAATTTGAATGGTGT GACTCATGTCTTTGTTGATGAAATACATGAAAGGGGCATGAATGAAGATTTCCTGCTGATTGTGCTTAAGGATCTTCTTCCCCGTCGCCGTGACTTGCGG CTGATTTTAATGAGTGCTACTCTGAATGCCGAACTGTTTTCGACTTATTATGGTGGAGCACCAACAATTCACATACCGGGCTTTACCTATGCAGTAAAGA CACATTTCTTAGAAGATGTGTTGAACATCACCGGATATCAGTTGTCTTCCTTCAATCAAATTGATGATTATGGACAAGATAAATTGTGGAAGACTCAGAA GCAGCTGACACCGAGGAAAAGAAAGAATCAGATCACTGCACTTGTTGAGGATGCTCTTCATAAATCAAATTTTGAGACTTGTAGCTCTAGGGTCCGTGAC TCTTTGTCAAACTGGATGCCTGATTGTATAGGTTTTAACCTTATTGAGGCAGTTCTATGCCATATTTGCCGGAAGGAGCGGGCAGGTGCTGTCTTAGTAT TCATGACTGGGTGGGAGGACATTAGCTCTTTAAAAGATCAGTTGAAATCTCATCCGCTTTTAGGTGATCCCAATAGGGTTCTGCTTTTAACATGCCATGG TTCTATGGCCACATCTGAACAGAAACTCATATTTGAAAGAGCACCTCCAAATATTCGTAAAATTGTTCTGGCCACAAACATGGCTGAGGCGAGTATTACA ATTAATGACGTAGTTTTTGTGGTTGATTGCGGAAAAGCGAAAGAAACCACTTATGATGCTTTGAACAATACACCTTGTTTGCTTCCTTCATGGATATCCC AAGCGTCTGCCCGGCAAAGAAGAGGCAGGGCTGGACGTGTTCAACCAGGTGACTGTTATCACCTTTACCCTAAATGTGTTTACGAAGCTTTTGCTGAATA TCAACTTCCAGAGCTGCTTCGAACTCCACTTAATTCTCTATGCTTGCAAATAAAAAGTTTGCAAGTAGCAAGTATAGCAGAGTTCTTGTCAGCTGCTCTC CAGCCACCAGAACAATTGGCTGTGTACAATGCCATTGATTTCCTTAAAATGATTGGGGCCCTGGATGAAAAGGAAAATTTAACAAATCTTGGAAAATATT TATCAATCCTTCCAGTGGATCCTAAGCTTGGAAAAATGCTGATAATGGGTGCAATCTTTCGCTGCTTTGACCCAGTACTAACCATTGTATCTGGGCTTAG TGTGAGGGATCCTTTCCTCTTGCCTCAGGACAAAAAGGAATTAGCAGGGACAGCAAAGTCTAGATTTTCGGCAAAAGATTATAGTGATCATATGGCTCTT GTCCGTGCATATGAAGGCTGGAAAGATGCTGAAAAAGAAGGATCAGCATATGAATACTGCTGGAGGAACTTTCTTTCTGCACAAACCATGCAAGCCATTC ATTCTCTGAGGAAACAGTTTAGCTTCATCCTGAAGGATGCCGGTCTTGCAGACGGAGACACAAGTGCCAATAACAAATTAAGTCACAGTCAGGAATTGGT TCGAGCAATAATATGTGCTGGTTTGTATCCTGGTATAGCCTCAGTTGTGCACAGAGAAACAACCATGTCTTTTAAAACGATGGATGACGGCCAAGTCCTA CTATATGCGAATTCCGTGAATGCACGCTACCAGACTATTCCCTACCCGTGGCTTGTCTTTGGTGAAAAAGTTAAAGTCAATGCTGTTTTCATACGTGATT CAACCGGCGTCTCCGATTCCATGTTGATTCTTTTCGGTGGTGCACTTCATCGTGGGGTGCAGGGAGGACATCTAAAAATGTTGGATGGCTATGTGGATCT CTTCATGGATCCTAATTTGGCAGACTGTTATCTGAAGCTAAAGGAAGAACTTGATAAGGTTATTCAGCAGAAGCTTGAAGATCCAAACAGCGACATTTAC AAAGAAGGGAAGTATCTTATGCTTGCTGTCCAAGAAATGATATCAGGAGATCAATGTGAAGGGAGATTCGTTTTTGGACGCGAAAGCAAACGACCGAGAG AATCAAACGACGACAGCAGATTCACGAAAGATGGGAGCAACCCAAAGAGCTTGCTACAGACTCTTCTGATGAGAGCCGGGCATTCCCCTCCAAAATACAA AACGAAGCACCTCAAGACGAATGAGTTCAGGGCATTGGTGGAGTTCAAAGGGATGCAATTTGTAGGGAAACCAAAGAGAAACAAGCAGATTGCAGAGAGG GATGCAGCTGTCGAGGCACTTGCCTGGTTGACTCACACCTCAACTGATTACAATCAAAATGAGGACGATGCGAATAACGACTCCCAACCAGACGTGACTG ACAACATGCTCAAACTACTGGGGAAACGCAGAAGATCAAAGCGTAGAACTGGTTGA
AA sequence Show only first row Show all	>Lus10043459 pacid=23168024 polypeptide=Lus10043459 locus=Lus10043459.g ID=Lus10043459.BGIv1.0 annot-version=v1.0 MRNPKLRSLLVGYSSSLYKLHRPQPCSRPLYASLLFFLPNPSLYNNNFSSLRRFSGYAVEQFSDDEYECDFENHKASSSVANIDEWKWKMSLLLRSETDQ EIVSKDRKDRRDYEQISNLAQRMGLYSELYGKVVVASKVPLPNYRPDLDDKRPQREVVLPLSLRRRVESLLQEHLDRTQLTSGKADGITDDTPADHVEIH NQAENPNSFIDDSVVEKVLQRRSLRLRNMQRAWQESPEGRRMLEFRKSLPSFKEKERLLQAIARNQVVVISGETGCGKTTQLPQYILESEIESGRGAFCS IICTQPRRISAMAVSERVSTERGEPLGESVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLR LILMSATLNAELFSTYYGGAPTIHIPGFTYAVKTHFLEDVLNITGYQLSSFNQIDDYGQDKLWKTQKQLTPRKRKNQITALVEDALHKSNFETCSSRVRD SLSNWMPDCIGFNLIEAVLCHICRKERAGAVLVFMTGWEDISSLKDQLKSHPLLGDPNRVLLLTCHGSMATSEQKLIFERAPPNIRKIVLATNMAEASIT INDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGDCYHLYPKCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVASIAEFLSAAL QPPEQLAVYNAIDFLKMIGALDEKENLTNLGKYLSILPVDPKLGKMLIMGAIFRCFDPVLTIVSGLSVRDPFLLPQDKKELAGTAKSRFSAKDYSDHMAL VRAYEGWKDAEKEGSAYEYCWRNFLSAQTMQAIHSLRKQFSFILKDAGLADGDTSANNKLSHSQELVRAIICAGLYPGIASVVHRETTMSFKTMDDGQVL LYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSMLILFGGALHRGVQGGHLKMLDGYVDLFMDPNLADCYLKLKEELDKVIQQKLEDPNSDIY KEGKYLMLAVQEMISGDQCEGRFVFGRESKRPRESNDDSRFTKDGSNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQIAER DAAVEALAWLTHTSTDYNQNEDDANNDSQPDVTDNMLKLLGKRRRSKRRTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10043459 [exp]	0	1
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10033845 [exp]	1.7	0.9381
AT5G14770			Tetratricopeptide repeat (TPR)...		Lus10026206 [exp]	2.0	0.8891
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10025377 [exp]	2.4	0.8885
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10025315 [exp]	2.8	0.8882
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013870 [exp]	3.7	0.8883
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10018994 [exp]	3.9	0.8953
AT5G19660		ATSBT6.1 ,ATS1P	SITE-1 protease (.1)		Lus10034919 [exp]	4.1	0.8700
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10002946 [exp]	4.2	0.8695
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10023353 [exp]	5.0	0.8887
AT2G33835	C3HZnF	FES1	FRIGIDA-ESSENTIAL 1, Zinc fing...		Lus10025447 [exp]	5.7	0.8837

Compare expression of checked genes

Lus10043459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.