Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50090 134 / 2e-40 unknown protein AT5G62900 120 / 6e-35 unknown protein AT1G60010 120 / 8e-35 unknown protein AT1G10530 109 / 1e-30 unknown protein AT5G67620 103 / 7e-28 unknown protein AT1G29195 42 / 0.0001 unknown protein AT2G30230 41 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034124 [exp] 248 / 8e-85 AT5G50090 147 / 3e-45 unknown protein Lus10004229 [exp] 165 / 5e-52 AT5G50090 150 / 1e-46 unknown protein Lus10042139 [exp] 154 / 1e-47 AT5G50090 141 / 4e-43 unknown protein Lus10030651 [exp] 124 / 3e-36 AT1G60010 171 / 4e-55 unknown protein Lus10029193 [exp] 122 / 2e-35 AT1G60010 178 / 1e-57 unknown protein Lus10010708 [exp] 120 / 1e-34 AT1G60010 177 / 3e-57 unknown protein Lus10030835 [exp] 117 / 5e-34 AT1G60010 150 / 2e-47 unknown protein Lus10019264 [exp] 98 / 1e-25 AT5G67620 163 / 5e-51 unknown protein Lus10011549 [exp] 47 / 2e-06 AT5G67620 90 / 1e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G072501 [exp] 172 / 6e-55 AT5G50090 152 / 4e-47 unknown protein Potri.012G077300 [exp] 155 / 5e-48 AT5G50090 168 / 1e-53 unknown protein Potri.008G146500 [exp] 130 / 9e-38 AT1G60010 189 / 3e-61 unknown protein Potri.010G095400 [exp] 128 / 1e-37 AT1G60010 187 / 5e-61 unknown protein Potri.007G005600 [exp] 112 / 2e-31 AT5G67620 184 / 7e-60 unknown protein Potri.013G153100 [exp] 43 / 2e-05 AT2G30230 189 / 5e-62 unknown protein Potri.019G123900 [exp] 41 / 0.0002 AT2G30230 159 / 3e-50 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043461 pacid=23168375 polypeptide=Lus10043461 locus=Lus10043461.g ID=Lus10043461.BGIv1.0 annot-version=v1.0 ATGGGGAATTGCCAAGCGGTGGACGCAGCGACGCTAGTGATACAGCACCCCGGCGGCAAGGTAGAGAAGCTCTATTCCCCCATCACCGCCTCCCAAGTCA TGAAAACTAACCCTGGCCACTACGTCGCTCTCCTCCTCTCCCCCACCCTCTATCCCGCCGCCGCCAACGATCGTACTACTCCGGCGAGCGGCGGCCCAGT GAAGCTGACGAGAATAAAGCTCCTCCGTCCGTCGGATACGCTCACCCTTGGCCGCGTTTACAGGCTCATCACCAATCAAGAGGTTATGAAAGGACTCTGG GCGAAGAAGCAAGCCAAGCTTAATAAAACCCTAGAATCACAAGCTGCTGCTTCTGCTCAATCATCATCAACAACAACTGATCACCAGAAGCTGGTTCAGA AAAGCGAACGGGAGAGAAAATCAATTAGTAGCGGTGGGGGGTCAATGTCGTCGTCAATTTTATCAGGAGGAGGAGGAGGCAGTGGGAGGAGATCATCAAG AACATGGCAGCCATCGTTGAACAGCATCTTGGAAACAGCCGGCAGCAGCAGCAGCGCCATCTAA
AA sequence Show only first row Show all	>Lus10043461 pacid=23168375 polypeptide=Lus10043461 locus=Lus10043461.g ID=Lus10043461.BGIv1.0 annot-version=v1.0 MGNCQAVDAATLVIQHPGGKVEKLYSPITASQVMKTNPGHYVALLLSPTLYPAAANDRTTPASGGPVKLTRIKLLRPSDTLTLGRVYRLITNQEVMKGLW AKKQAKLNKTLESQAAASAQSSSTTTDHQKLVQKSERERKSISSGGGSMSSSILSGGGGGSGRRSSRTWQPSLNSILETAGSSSSAI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50090			unknown protein		Lus10043461 [exp]	0	1
AT3G23090			TPX2 (targeting protein for Xk...		Lus10021223 [exp]	2.4	0.8998
AT5G26780		SHM2	serine hydroxymethyltransferas...		Lus10028218 [exp]	2.4	0.9146
AT5G50090			unknown protein		Lus10034124 [exp]	5.1	0.8715
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10021968 [exp]	6.9	0.9125
AT2G40120			Protein kinase superfamily pro...		Lus10028283 [exp]	7.7	0.9059
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10022231 [exp]	8.5	0.9235
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10024183 [exp]	9.6	0.8769
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10042923 [exp]	16.2	0.8922
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Lus10002151 [exp]	16.6	0.8847
AT1G19170			Pectin lyase-like superfamily ...		Lus10039909 [exp]	22.2	0.9128

Compare expression of checked genes

Lus10043461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.