Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2) AT4G25800 269 / 4e-81 Calmodulin-binding protein (.1.2) AT5G57580 265 / 6e-79 Calmodulin-binding protein (.1) AT2G18750 248 / 3e-73 Calmodulin-binding protein (.1.2.3) AT3G47830 232 / 1e-70 DNA glycosylase superfamily protein (.1) AT2G24300 227 / 5e-66 Calmodulin-binding protein (.1.2) AT4G31000 224 / 6e-65 Calmodulin-binding protein (.1.2) AT5G26920 217 / 5e-62 CBP60G Cam-binding protein 60-like G (.1.2) AT1G73805 213 / 2e-61 SARD1 SAR Deficient 1, Calmodulin binding protein-like (.1) AT2G36490 60 / 6e-09 DML1, ROS1 REPRESSOR OF SILENCING1, demeter-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034121 [exp] 842 / 0 AT5G62570 396 / 1e-133 Calmodulin binding protein-like (.1.2) Lus10034120 [exp] 327 / 1e-106 AT3G47830 351 / 2e-121 DNA glycosylase superfamily protein (.1) Lus10011248 [exp] 262 / 5e-78 AT5G57580 751 / 0.0 Calmodulin-binding protein (.1) Lus10018437 [exp] 259 / 4e-77 AT5G57580 746 / 0.0 Calmodulin-binding protein (.1) Lus10036301 [exp] 248 / 4e-73 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10019056 [exp] 248 / 8e-73 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10001436 [exp] 241 / 3e-70 AT5G57580 809 / 0.0 Calmodulin-binding protein (.1) Lus10029861 [exp] 240 / 3e-70 AT4G25800 332 / 2e-106 Calmodulin-binding protein (.1.2) Lus10001630 [exp] 241 / 4e-70 AT5G57580 811 / 0.0 Calmodulin-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G071800 [exp] 365 / 2e-118 AT5G62570 499 / 4e-173 Calmodulin binding protein-like (.1.2) Potri.012G077000 [exp] 365 / 5e-118 AT5G62570 493 / 1e-170 Calmodulin binding protein-like (.1.2) Potri.004G035100 [exp] 259 / 5e-77 AT5G57580 792 / 0.0 Calmodulin-binding protein (.1) Potri.018G095300 [exp] 256 / 7e-76 AT5G57580 820 / 0.0 Calmodulin-binding protein (.1) Potri.011G043200 [exp] 253 / 5e-75 AT5G57580 752 / 0.0 Calmodulin-binding protein (.1) Potri.011G043300 [exp] 253 / 1e-74 AT5G57580 770 / 0.0 Calmodulin-binding protein (.1) Potri.015G071300 [exp] 242 / 3e-74 AT3G47830 343 / 9e-119 DNA glycosylase superfamily protein (.1) Potri.012G054900 [exp] 244 / 8e-74 AT1G73805 407 / 1e-139 SAR Deficient 1, Calmodulin binding protein-like (.1) Potri.015G045300 [exp] 244 / 4e-73 AT1G73805 414 / 1e-141 SAR Deficient 1, Calmodulin binding protein-like (.1) Potri.018G111200 [exp] 243 / 3e-71 AT2G24300 759 / 0.0 Calmodulin-binding protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07887 [flax] [poplar] Calmodulin_bind Calmodulin binding protein-like
Representative CDS sequence Show only first row Show all	>Lus10043463 pacid=23168201 polypeptide=Lus10043463 locus=Lus10043463.g ID=Lus10043463.BGIv1.0 annot-version=v1.0 ATGGCTACCCTCTCAGACTCTGGATCAGAATCAATCCCGATCGCCCAAAAGAATCCCCAACCCAAAATGCAGAAAACCCGCAAGAGAAAGCAACCTCCGC CGCAGCAGCAGCAGCATAAGCCTCAAACAGCGAAACCCACCACCGCCACCAAGGAAGAAGAGCCATTCCCGACGCACCTCCGGCCCACCCCTCAAGACTG CAGAGCCATTCGCGACTCCCTCCTTGCCCACCATGGCTTCCCTCCGGAGTTCGCCAAGTATCGCCGCGATAGACCAGCTCGTTCCCCGGATGATGATGAC TCCTTGCCAAGCAATGGCATCATGCAATCGGAGGACGGTGAACAAGAGGAGAGCGTTTTGGATGGTCTGGTGAAAACCGTGTTCTCCCAAAACACCACTG AGGTTAACTCCTTGAGGGCCTTTTCCAATCTCAAAACCGCTTTTCCTTCCTGGGAAGATGTGCTTGCTGCTGAGTCCAAATCTGTTGAGAATGCAATAAG GTGTGGAGGTCTAGCTCCGAGGAAGACTTCCTGTATTTTAAACTTGTTGAGCTGTTTGCTGGAGAGAAAAGGCAAGTTGTGTTTGGAATATTTGCGGAAT CTGTCTGTCGACCAAGTCAAAGCCGAGCTTTCTCTCTTCAAAGGAATTGGTCCCAAAACGGTATCTTGTGTTCTAATGTTCAATCTTCAGCACGATGACT TCCCAGTGGATACACATGTGAAAGAGGAAATTGAAACAGCACTGAAAAAGCACTTGATCAGCTTTGCCTGGAACAGCGGAAAAGAGAGGGGCTCTACTGA ATCAAGATACGTAAAGCTACATTTGTCGAACAATCTCTCTCTTCCCATTTTTACCGGGGCTCGTATAGAAGGAGACGATTCCTCTATTTTACAAGTAGTT CTGATTGACAATCAAACTGGGAAGGTTGTCAACTCTGGCCCTGCATCTTCAGCCAGGGTAGAAGTTGTGGTTCTTGAGGGTGATTTTGATAGTGATGAAT GCTATAATTGGACACCTGAAGAATTCAAGAACAACATTGTTAAAGAGCGAGAAGGGAAGAAACCACTTCTTTCAGGAGACGTGCTTCTGAATCTTAAAGA TGGGGTTGGTTTGGTCGGAGATCTTTCGTTTTCAGATAATTCAAGCTGGACTAGAAGCAGAAAGTTCAGAATTGGAGCTAGATCTCTCGACAATTTTGAT GGAGTTAGAGTAATAGAAGCCAAGTCTGAATCTTTCATTGTCAGAGATCACCGAGGAGAATTGTACAAGAAGCATCACCCTCCAGTTCTGTCAGACGAAG TATGGAGACTGGAAAAGATTGGTAAAGATGGAGCTTTCCACAAACGTTTGTGTCGAGAAAATATTCTTACAGTGAAGGATTTTCTCACGCACCTGTTTAT AAACTCTGCAAAGCTCCGGCATGTTGATGCTCAGAACTTGGTCATTGCTGCATTTGGGCACTGGGATGAAGTCATATGTTGTGAGGACGAGGCGTCTCTC ATGGCTGCATCTTCAAACTTGAACGGTGTCCCCTATAGTTCAAGCTCATCAAAGACAGAGAACTCTAATAGCACAAAGGCGTTGGCTTTACAGAAACCGG GAGTGTTTGATTTCGCACAGCCAAGTGCAAGTTCTCCTGATATAGTGTCATCCATGTATCCCAACCTAGGTGATTACGACTTCCATGGTATTGAAAACAT GGGTCTCAGATACGATCAGTCATTCAATTTCGGTAGCCTAGTCCCCAATCCACTCATCCATGAATCGGATAGCATAACCCAAGCCTTATGTGATGATGAT CATCTCGGGTTCTTTGATACTGATTTGCAGTCGCAAAATCTGTGCTTGGGATCGCCAGCTGATTTACAGAGTGCAGTTGATAGTTTCCTGCTGGCACGTT CATCAACTGCTGTCGTTCCCATTGGTAGCAAGGCTCAGAGGAGATGGGCGAAAGTATCTAGCGTGTTGAGATGGTTCTCTGTTCGGAAGCTTGTTGCGAA AAGGAATCGTGTTAGAGACATTCATGATTCAGTTGATGTCAGAAAGATAGTTAGGAGGTGA
AA sequence Show only first row Show all	>Lus10043463 pacid=23168201 polypeptide=Lus10043463 locus=Lus10043463.g ID=Lus10043463.BGIv1.0 annot-version=v1.0 MATLSDSGSESIPIAQKNPQPKMQKTRKRKQPPPQQQQHKPQTAKPTTATKEEEPFPTHLRPTPQDCRAIRDSLLAHHGFPPEFAKYRRDRPARSPDDDD SLPSNGIMQSEDGEQEESVLDGLVKTVFSQNTTEVNSLRAFSNLKTAFPSWEDVLAAESKSVENAIRCGGLAPRKTSCILNLLSCLLERKGKLCLEYLRN LSVDQVKAELSLFKGIGPKTVSCVLMFNLQHDDFPVDTHVKEEIETALKKHLISFAWNSGKERGSTESRYVKLHLSNNLSLPIFTGARIEGDDSSILQVV LIDNQTGKVVNSGPASSARVEVVVLEGDFDSDECYNWTPEEFKNNIVKEREGKKPLLSGDVLLNLKDGVGLVGDLSFSDNSSWTRSRKFRIGARSLDNFD GVRVIEAKSESFIVRDHRGELYKKHHPPVLSDEVWRLEKIGKDGAFHKRLCRENILTVKDFLTHLFINSAKLRHVDAQNLVIAAFGHWDEVICCEDEASL MAASSNLNGVPYSSSSSKTENSNSTKALALQKPGVFDFAQPSASSPDIVSSMYPNLGDYDFHGIENMGLRYDQSFNFGSLVPNPLIHESDSITQALCDDD HLGFFDTDLQSQNLCLGSPADLQSAVDSFLLARSSTAVVPIGSKAQRRWAKVSSVLRWFSVRKLVAKRNRVRDIHDSVDVRKIVRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62570			Calmodulin binding protein-lik...		Lus10043463 [exp]	0	1
AT1G60995			unknown protein		Lus10014638 [exp]	2.4	0.9239
AT5G01010			unknown protein		Lus10042743 [exp]	4.0	0.9205
AT1G04555			unknown protein		Lus10014458 [exp]	4.4	0.9267
AT5G62570			Calmodulin binding protein-lik...		Lus10034121 [exp]	4.9	0.9177
AT4G34280			transducin family protein / WD...		Lus10026603 [exp]	5.5	0.9188
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10018963 [exp]	8.5	0.9077
AT1G71110			unknown protein		Lus10013492 [exp]	8.5	0.9047
AT4G12760			unknown protein		Lus10001181 [exp]	8.8	0.9187
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10018289 [exp]	10.6	0.9088
					Lus10034398 [exp]	11.2	0.9232

Compare expression of checked genes

Lus10043463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.