Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65200 454 / 2e-154 ATPUB38 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) AT5G62560 396 / 5e-132 PUB41 RING/U-box superfamily protein with ARM repeat domain (.1) AT5G40140 359 / 1e-117 RING/U-box superfamily protein with ARM repeat domain (.1) AT3G47820 287 / 2e-90 PUB39 PLANT U-BOX 39 (.1) AT3G46510 106 / 7e-24 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G23140 103 / 7e-23 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT2G28830 100 / 1e-21 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 91 / 7e-19 PUB15 Plant U-Box 15 (.1) AT1G23030 87 / 6e-18 PUB11 ARM repeat superfamily protein (.1) AT1G71020 87 / 7e-18 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034119 [exp] 840 / 0 AT5G65200 562 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Lus10039470 [exp] 264 / 9e-81 AT5G40140 438 / 3e-148 RING/U-box superfamily protein with ARM repeat domain (.1) Lus10039447 [exp] 108 / 8e-25 AT5G40140 434 / 1e-146 RING/U-box superfamily protein with ARM repeat domain (.1) Lus10016565 [exp] 102 / 1e-22 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10019308 [exp] 102 / 2e-22 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10040834 [exp] 100 / 6e-22 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10012260 [exp] 99 / 2e-21 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10016016 [exp] 98 / 3e-21 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10011514 [exp] 99 / 4e-21 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G071200 [exp] 556 / 0 AT5G65200 536 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Potri.012G076400 [exp] 508 / 2e-175 AT5G65200 469 / 2e-160 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Potri.017G073400 [exp] 257 / 6e-80 AT5G40140 328 / 9e-108 RING/U-box superfamily protein with ARM repeat domain (.1) Potri.009G029600 [exp] 112 / 9e-26 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 109 / 7e-25 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.004G205000 [exp] 101 / 2e-22 AT5G42340 654 / 0.0 Plant U-Box 15 (.1) Potri.010G113900 [exp] 100 / 3e-22 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.008G128600 [exp] 96 / 1e-20 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.005G144700 [exp] 96 / 2e-20 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 95 / 4e-20 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10043464 pacid=23168028 polypeptide=Lus10043464 locus=Lus10043464.g ID=Lus10043464.BGIv1.0 annot-version=v1.0 ATGGGCGGTAATGGAAAACACCACCGTTGGAGAATCTCCTTTCACCACCACCACCGTCCTAAACCATCATCCCAACCTCCCTCCGAATTCATCTGCCCCA TTTCCGGCACCTTGATGTACGACCCTGTCGTTGTCTCTTCCGGCCAGACCTTCGAGCGCGTCTCCGTTCAGGTCTGCCTTGACCTCGGCTTCGTCCCTGT TCTGGAAGACAACTCTTTCCCTGATTTGACCGCCGTTATCACTAATACTGCCTTCAAGAAGACCATTCTTAACTGGTGCGATAAGACGGGTGCTCCGCAC CCTCACCCGCCGGATTACGTCTCCGTCGAGAAAATCATGCGGGCCAAGATGGTGGAGCAGCAGTCGTCTGCGTCGTCGTCTGTTGACAGCGTGAATCCGG ATCTTAGGGTGTCTGAGAGGGAGCTTCTCAAGGCTGTGGCGGAGAATCCTCCGGTTTTGTTCTCCCACGCAGCTACAGAGGTGAGTCCTCGAGTTAATCA TTTCTACTCCACCTCCTCAGATGAATCTGTGATTGTCGACGGCGGCGGCGGAGGAGGAGGAAGTGGAGCTGCTAGTCCGCTGACGCCGCTTCCACTCGCT ACCAAGCCAGCTTGCTACTCTCCCCCAACGTCTTCGAATAATTCTTCCGAGATAGCGACGGAATTCGAAACCCTAACCCTAATTCAGACTCCGAGCTCCA CGAATTCCGATTCGAATTTTTCAACTCCGGAGGAAGCCGAGATCGTGGCAAAGCTGAAAAGCCCGGAAGTTCACGAGCAGGAACATGGCGTGATTTCGCT GAGGAAACTGACAAGAACCAGAGACGAAATCAGAGGCTCTATATGTACGCCCCGGCTGCTCTCGGCTCTCCGCAGCGCCATCGCGTCAAGGTACAGCATA CTGCAGACCAACGCCATGGCCTCGCTGGTGAATCTCTCCCTGGAGAAACCTAACAAGGTGAAGATCGTGAGGTCCGGATTCGTCCCCTTGCTGATCGATC TGCTGAAAGGAGGATCCAGCGAGTCGCAGGAGCACGCCGCGGGAGCGCTGTTCAGCTTAGCGCTGGAAGACGAGAACAAGATGGCCATCGGCGTTCTCGG AGCATTGCAGCCGCTGATGTACGCGCTAAGATCTGAAAGCGAGCGGACTCGGATGGACTCGGCTCTGGCGCTGTACCACTTGACACTAATCCAGAGCAAC CGAGTAAAGCTGGTGAAACTAGGAGCAGTCCCGACGCTGTTGAGCTTGGTGAAGCTGAGCGGACTATCGAGCAGGCTGCTGCTAGTGCTGTGCAACCTGG CCGTGTGCGGGGAAGGAAGGTCAGCAATGCTGGACGGGAATGCGGTGGCGATACTGGTGGGAATGCTGAGGGAAGGTAGTGAAGGTGGTGATGCGGAGAA CTGCGTGGCGGCGCTGTACTCGCTGAGCCCGGGGAGCTTGAGGTTCAAGGGGCTGGCGGTGGAGGGGAGGGCAGGAGAGGTGTTGAGAGAAGTGGAAGAG AGAGGGAGCGAGCGGGGACGAGAGAAGGCCAGGAGGATATTGCAGATGATGAAGGGAAGAGGAGACGGCGATGAGGAGGAGTCGGAGGTTGATTGGGATG AGATACTGGAATCAGGTGGACTGAGTCGGAGTCGGTACAGAGGAATGCCTGCTGCCGGTGCGAGTAAGGTTCATGCTCCGAATTCAAGTGAGTTTTGA
AA sequence Show only first row Show all	>Lus10043464 pacid=23168028 polypeptide=Lus10043464 locus=Lus10043464.g ID=Lus10043464.BGIv1.0 annot-version=v1.0 MGGNGKHHRWRISFHHHHRPKPSSQPPSEFICPISGTLMYDPVVVSSGQTFERVSVQVCLDLGFVPVLEDNSFPDLTAVITNTAFKKTILNWCDKTGAPH PHPPDYVSVEKIMRAKMVEQQSSASSSVDSVNPDLRVSERELLKAVAENPPVLFSHAATEVSPRVNHFYSTSSDESVIVDGGGGGGGSGAASPLTPLPLA TKPACYSPPTSSNNSSEIATEFETLTLIQTPSSTNSDSNFSTPEEAEIVAKLKSPEVHEQEHGVISLRKLTRTRDEIRGSICTPRLLSALRSAIASRYSI LQTNAMASLVNLSLEKPNKVKIVRSGFVPLLIDLLKGGSSESQEHAAGALFSLALEDENKMAIGVLGALQPLMYALRSESERTRMDSALALYHLTLIQSN RVKLVKLGAVPTLLSLVKLSGLSSRLLLVLCNLAVCGEGRSAMLDGNAVAILVGMLREGSEGGDAENCVAALYSLSPGSLRFKGLAVEGRAGEVLREVEE RGSERGREKARRILQMMKGRGDGDEEESEVDWDEILESGGLSRSRYRGMPAAGASKVHAPNSSEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65200		ATPUB38	ARABIDOPSIS THALIANA PLANT U-B...		Lus10043464 [exp]	0	1
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10040927 [exp]	1.4	0.8297
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Lus10040681 [exp]	3.5	0.8226
AT1G55365			unknown protein		Lus10010316 [exp]	15.9	0.7387
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Lus10041721 [exp]	16.0	0.8144
AT5G23230		NIC2	nicotinamidase 2 (.1)		Lus10040988 [exp]	16.7	0.7901
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10000963 [exp]	17.9	0.7849
AT4G38670			Pathogenesis-related thaumatin...		Lus10041108 [exp]	19.1	0.7212
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10032561 [exp]	20.4	0.7506
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10022671 [exp]	20.6	0.7818
AT3G18215			Protein of unknown function, D...		Lus10009010 [exp]	20.7	0.7696

Compare expression of checked genes

Lus10043464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.