Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50110 336 / 2e-116 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034118 [exp] 332 / 1e-115 AT5G50110 188 / 2e-59 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G076100 [exp] 392 / 1e-138 AT5G50110 377 / 1e-132 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G071001 [exp] 81 / 1e-19 AT5G50110 76 / 2e-18 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02527 [flax] [poplar] GidB rRNA small subunit methyltransferase G
Representative CDS sequence Show only first row Show all	>Lus10043465 pacid=23167937 polypeptide=Lus10043465 locus=Lus10043465.g ID=Lus10043465.BGIv1.0 annot-version=v1.0 ATGATGTTGATTGGGCGGTGTAGGCCTTCCACTGTCTCCTTTCTATTTCCTCCCAGGATTTTCCTCCAACACCTTCCCAACCCAACTTCCCTACCACTTC GTCCTGCCAGATTGCAGGCTAAATCACTGACTGCCGCCGGAGTTCACAGCTCTTCCGACTTCGACACGCTAAATTGCCGCCAGCAGGACCAGATTAGACT CTATGTCGATGCTCTTCTCCAATGGAACCAGAAGATGAATCTCACTGCAGTTACAAAGGTGGAAGATGTCATGTCAAGGCATGTTGAGGACTCGCTTGCA CTTATTCCTCCGATTATCAGCTCTTACACTTCACATTGCAGTGGTTCAGTTGATAGCCTGAGTGTTGTTGATGTTGGCACTGGTCCCGGGCTTCCTGGAA TGATCTTGGCTATCGCTTGTCCAGGTTGGCAAGTAACACTTATGGAGTCCATGAAAAAGCGTTGTGATTTCTTGGAGCACGCTGTGGGCATCACTGAGTT GTCCAACGTTCAAGTAGTGAGGGGTAGAGCAGAGAACTTGGGGCAGGATGTTTCCTATAGAGAACAGTTTGATGTTGCAGTGGCCAGAGCAGTTGCAGAA ATGAGAATCCTAGTGGAGTACTGTCTGCCTCTGGTTCATGTTGGAGGGTTGTTTGTTGCAGCGAAGGGCCATAATCCAGAAGAGGAAGTCAAGATTGCAG AAAGATCAATACAACTAATGGGTGCCTCTCTGCTGCAACTGCATCCAGTAAAATCACACAGTCGATATGGACAGAGGACTGCTATTATATGCTTAAAGGA TCGATCTACGCCAAAGAAATACCCGCGTGAGCCAGGTACTCCTGCAAAGTTGCCGTTGTGA
AA sequence Show only first row Show all	>Lus10043465 pacid=23167937 polypeptide=Lus10043465 locus=Lus10043465.g ID=Lus10043465.BGIv1.0 annot-version=v1.0 MMLIGRCRPSTVSFLFPPRIFLQHLPNPTSLPLRPARLQAKSLTAAGVHSSSDFDTLNCRQQDQIRLYVDALLQWNQKMNLTAVTKVEDVMSRHVEDSLA LIPPIISSYTSHCSGSVDSLSVVDVGTGPGLPGMILAIACPGWQVTLMESMKKRCDFLEHAVGITELSNVQVVRGRAENLGQDVSYREQFDVAVARAVAE MRILVEYCLPLVHVGGLFVAAKGHNPEEEVKIAERSIQLMGASLLQLHPVKSHSRYGQRTAIICLKDRSTPKKYPREPGTPAKLPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50110			S-adenosyl-L-methionine-depend...		Lus10043465 [exp]	0	1
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10033809 [exp]	4.2	0.8857
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10039254 [exp]	4.5	0.8931
AT2G01440			DEAD/DEAH box RNA helicase fam...		Lus10034589 [exp]	4.6	0.8738
AT4G26370			antitermination NusB domain-co...		Lus10010325 [exp]	7.5	0.8934
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10011282 [exp]	11.7	0.8602
AT4G24175			unknown protein		Lus10013559 [exp]	12.0	0.8702
AT4G24810			Protein kinase superfamily pro...		Lus10043122 [exp]	13.1	0.8807
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10039049 [exp]	14.8	0.8803
AT2G29260			NAD(P)-binding Rossmann-fold s...		Lus10040730 [exp]	18.2	0.8055
AT5G43960			Nuclear transport factor 2 (NT...		Lus10014469 [exp]	18.3	0.8622

Compare expression of checked genes

Lus10043465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.