Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50120 395 / 8e-135 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 372 / 2e-125 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 291 / 1e-93 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 258 / 3e-80 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 238 / 2e-72 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 234 / 4e-71 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 229 / 2e-69 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 225 / 2e-68 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 226 / 6e-68 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 220 / 3e-67 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034117 [exp] 716 / 0 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1) Lus10029206 [exp] 304 / 3e-98 AT1G24130 353 / 5e-119 Transducin/WD40 repeat-like superfamily protein (.1) Lus10036881 [exp] 282 / 4e-90 AT1G24530 409 / 5e-141 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006460 [exp] 265 / 1e-83 AT1G24530 414 / 3e-143 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011402 [exp] 263 / 4e-83 AT1G24530 406 / 3e-140 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 255 / 9e-80 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 252 / 2e-78 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 244 / 1e-75 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 236 / 1e-72 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G076000 [exp] 502 / 1e-176 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 497 / 9e-175 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 305 / 5e-99 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 264 / 1e-82 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 258 / 2e-80 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 246 / 1e-75 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 246 / 4e-75 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 243 / 2e-74 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 236 / 4e-72 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G202700 [exp] 228 / 2e-69 AT3G51930 531 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10043466 pacid=23168148 polypeptide=Lus10043466 locus=Lus10043466.g ID=Lus10043466.BGIv1.0 annot-version=v1.0 ATGGCAGATGGGGTTGGATCCAGAGGAAGAAGCCAATTTCTTCCAACTCCTGGAATTCTAGCAAGCAACCGAGTGGTCTATCAATTTCTTGCACTTCCTT TAACTTCATTTGCTTGTTCTTCCCCAAACCCAAAACCCTTTTTGCCTAAAAGAAGTAAAAAAGTCTCCTTTAAATATCCTAACCCACTCACCTCACTTCT CCAATTCACCTCCTCCCTTCCAGTTCCAGTTCCAGTTTCATATCTCTCTGCCACAGACATGGGACTCACCTCCGGCGACTACCATCCAAGTCACTCGGGA GGAAACGAGTCGTCGGACTCGTCGTATTCTGATGATCACCATCTCCAAACTCATTCATCTCTTCATTCACAGCTTAGCCTTCCAACAGTTCCATCTCTGA CCTCACACCACCCTTATAACTACTTCCTCTCCAACTACTTACCCTACCACTGCCTAAACACTCTTCAAGGTCATACATCCTACGTATGCTCCCTAACCAT AGCCGGAAACTTCCTATACAGTGGCTCATCAGACACTGAAATCCGGTCGTGGAGACTAGACACACCGGATGACCATGACAACAACGTTGTAGCTCAAGGA AAGGGAACTGTTAAGTCATTGGTGGTCTTGGAAGACAAGCTGTTCAGTGCCCATCAAGATCACAAGATCCGGGTTTGGAAAATCAGCGACAACCATAAGT TCCAACGTCTGGCTACTTTGCCAACGCTAGGTGACCGTGCTTCGAAGATCCTGTCTCCCGGGAATCAGGTTCAGGTACGGAGGCACAAGACATCGACATG GGTTCACCATGTTGATACAGTTGCAGCACTGGCTGTATCGAGCGACGAGTCGCTCCTCTACTCGGTTTCATGGGACAGGACACTGAAGATATGGAGAACG AGCGACTTCAAATGCCTGGAATCGGTAACCAATGCACACGACGATGCAATCAATGCGGTAGCATCATCATCCTCATCGGAGGATGGAGAAGTAGTGTATA CAGGATCAGCAGACAAGAAAATCAAGGTGTGGAAGATGCAAAACAACCAAGGAGGAGGAGGAGGAGAGAACAATAAAAGGGGAAAGTATTCACTTGTGGA GACACTTGAGAAACACAATTCAGGGATCAACGCATTGGCTCTCAGCCAGGACGGCTCTGTTCTCTACTCAGGTGCCTGCGACAGATCGATTCTGGTGTGG GCGAAGAACGAAGAAGGGAGCTTGGTGGTCATGGGAGCACTTAGAGGGCATACAGAGTCGATCCTCTGCTTGTTCGTCGTGTCTGATTTGGTATGCAGTG GTTCTGCAGACAAGACTGTTAGAGTCTGGAGAGGAATAGAAGGGAAATACTCATGTCTGTCAGTTTTAGAAGGACATGGAGGACCCATCAAGTGCTTGAC TGCAACAGTCGATCGTTGCAATTCGTTGGAGGAATCCTATTATGTCTATAGTGGGAGCTTGGACTGTGATATCAAGGTGTGGCAGATTAGAGTCCCTGTT CTCTGA
AA sequence Show only first row Show all	>Lus10043466 pacid=23168148 polypeptide=Lus10043466 locus=Lus10043466.g ID=Lus10043466.BGIv1.0 annot-version=v1.0 MADGVGSRGRSQFLPTPGILASNRVVYQFLALPLTSFACSSPNPKPFLPKRSKKVSFKYPNPLTSLLQFTSSLPVPVPVSYLSATDMGLTSGDYHPSHSG GNESSDSSYSDDHHLQTHSSLHSQLSLPTVPSLTSHHPYNYFLSNYLPYHCLNTLQGHTSYVCSLTIAGNFLYSGSSDTEIRSWRLDTPDDHDNNVVAQG KGTVKSLVVLEDKLFSAHQDHKIRVWKISDNHKFQRLATLPTLGDRASKILSPGNQVQVRRHKTSTWVHHVDTVAALAVSSDESLLYSVSWDRTLKIWRT SDFKCLESVTNAHDDAINAVASSSSSEDGEVVYTGSADKKIKVWKMQNNQGGGGGENNKRGKYSLVETLEKHNSGINALALSQDGSVLYSGACDRSILVW AKNEEGSLVVMGALRGHTESILCLFVVSDLVCSGSADKTVRVWRGIEGKYSCLSVLEGHGGPIKCLTATVDRCNSLEESYYVYSGSLDCDIKVWQIRVPV L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50120			Transducin/WD40 repeat-like su...		Lus10043466 [exp]	0	1
AT5G50760			SAUR-like auxin-responsive pro...		Lus10011332 [exp]	6.5	0.8962
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10006690 [exp]	10.5	0.8843
AT4G27290			S-locus lectin protein kinase ...		Lus10016871 [exp]	13.3	0.9008
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	18.3	0.8842
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10014429 [exp]	27.7	0.8837
AT1G51340			MATE efflux family protein (.1...		Lus10026303 [exp]	28.8	0.8806
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10014615 [exp]	32.0	0.8731
AT5G50760			SAUR-like auxin-responsive pro...		Lus10003140 [exp]	33.4	0.8811
AT4G17900			PLATZ transcription factor fam...		Lus10000482 [exp]	35.9	0.8816
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10035194 [exp]	36.4	0.8672

Compare expression of checked genes

Lus10043466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.