Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043467 pacid=23168051 polypeptide=Lus10043467 locus=Lus10043467.g ID=Lus10043467.BGIv1.0 annot-version=v1.0 ATGGAAAGGAGATTTGGATATCAAGGATATTACGGTAGAATTTGCTCACAACCTCTCACTCCTATTTTCTCTCTTTTGGAACCAAAAAAACCCAACGTGG AAGCCTCGTTGAATCGACGCTGTCAGGAGCAGTCCAATTTAGTCTCCCTCATTGACTACCGTCTCAAGTCGCGCCTTCTTTCACAGGAACAGGGGAATCA GAGCCGTCAGGTACCGGGTGTTCGAATTGGAAAAGTCAAGAACCAAATGTTAGAAACAGTTAAGTCACTGGCGACATTGTTTTATTTCTTTGGGATTGGT TTCAGCACTAACTACCAGTTCTTCTACATCAGCAACCGCTTTCGATAA
AA sequence Show only first row Show all	>Lus10043467 pacid=23168051 polypeptide=Lus10043467 locus=Lus10043467.g ID=Lus10043467.BGIv1.0 annot-version=v1.0 MERRFGYQGYYGRICSQPLTPIFSLLEPKKPNVEASLNRRCQEQSNLVSLIDYRLKSRLLSQEQGNQSRQVPGVRIGKVKNQMLETVKSLATLFYFFGIG FSTNYQFFYISNRFR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10043467 [exp]	0	1
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027394 [exp]	5.8	0.8529
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031677 [exp]	11.6	0.8401
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031676 [exp]	12.2	0.8429
AT2G42900			Plant basic secretory protein ...		Lus10031462 [exp]	17.6	0.8098
AT2G17080			Arabidopsis protein of unknown...		Lus10025121 [exp]	17.9	0.8198
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Lus10008412 [exp]	18.4	0.7650
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Lus10020464 [exp]	18.5	0.8208
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10022883 [exp]	18.9	0.8300
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10001107 [exp]	19.4	0.8126
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10025198 [exp]	19.9	0.8212

Compare expression of checked genes

Lus10043467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.