Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13690 998 / 0 NAGLU, CYL1 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034116 [exp] 1531 / 0 AT5G13690 933 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1) Lus10029494 [exp] 1028 / 0 AT5G13690 1174 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1) Lus10039598 [exp] 1028 / 0 AT5G13690 1173 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G075932 [exp] 1326 / 0 AT5G13690 1020 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1) Potri.009G058100 [exp] 1029 / 0 AT5G13690 1208 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF05089 [flax] [poplar] NAGLU Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain
Representative CDS sequence Show only first row Show all	>Lus10043468 pacid=23168237 polypeptide=Lus10043468 locus=Lus10043468.g ID=Lus10043468.BGIv1.0 annot-version=v1.0 ATGGCCTCCCCCACTCCGCCACCGCCGCAGCTATTGCTACTCACCGTTTTCTTCTTGCTCTTATCCTGTATCTTGCCGCCTCGCCAATCGGCGGCCGCGA TCGGAGTCGATTCAATTTCGCGCCTTCTTGAAATTCAGGACCGCGAGCGGGCTTCTCCTTCACTCCAGGTAGCTGCTGCTCGAGGCGTTCTTCATCGCCT GCTTCCTTCTCACACTTCCAGCTTTGAGTTCCGTATTGTCTCTGAGGAGAAATGTGGAGGAAAGTCGTGCTTCATTATCTCGAACCATCCATATTCCGCC AGACATGGCGCGCCGGATATTATGATATCTGGGGTCACCGGAGTGGAAATAGTAGCTGGTCTGCATTGGTATTTGAAGTACTGGTGTGGTGCACACATCT CTTGGGGGAAAACTGGCGGTGCTCAGTTGAATTCAGTGCCGAGGTCGGGCTCTCTTCCTCGTGTGCAAGATGATGGCGTATTGGTTCAGAGACCCGTTTC TTGGAATTATTACCAGAATGCTGTCAGCTCTAGTTATACTTTCGCTTGGTGGGACTGGCAAAGATGGGAGAAAGAAATTGATTGGATGGCTCTCCACGGC ATCAACCTACCGTTAGCATTTACTGGGCAAGAAGCTATTTGGCAAAAAGTTTTCCAGAAATTCAATATCACCAAAGCCGGGTTGGATGACTTTTTTGGAG GTCCAGCATTTCTCGCTTGGTCACGGATGGCAAATCTCCATGGATGGGGTGGACCACTTCCACAAAGCTGGTTGGACCAGCAATTAGTGATGCAGAAAAA AATCCTTGCTAGAATGTATGAACTTGGAATGACTCCAGTCCTTCCAGCGTTCTCTGGAAACGTCCCAGCTGCTTTGATAGATCTATTTCCATCAGCAAAG ATAACTCGTTTAGGCAATTGGTTTTCTGTTGAGAGCAACCCAAGATGGTGTTGCACATATCTTCTTGATGCAACAGATCCCTTGTTTATTGAAATTGGAA AAGCATTCATCGAGGAACAACTAAAAGAGTACGGAAGAACAAGCCACATATATAACTGCGACACCTTTGATGAGAATACGCCACCAGTTGATGACCCAGA GTATGTCTCTTCACTTGGCGCAGCAACCTTTAAGGGAATGCAAGCTGGTGACAAGGATGCTATCTGGCTCATGCAGGGGTGGCTATTTGCTTATGATGAT TTCTGGAAGCCACCACAAATGAAGGCACTTCTACATTCTGTACCCCTTGGGCGACTTGTAGTTCTTGATCTTTATGCTGAAGTGAAACCCATATGGAGTG CTTCTGAGCAATTCTACGGCGTTCCTTACATTTGGTGTATGCTACATAATTTTGCAGGAAATGTAGAGATGTATGGAGTCTTGGATTCAGTAGCTTCTGG ACCAGTTGAAGCTCGTCTTAGTCTAAATTCAACAATGGTTGGTGTTGGGATGTCAATGGAAGGTATAGAACAAAACCCTATCGTGTATGATCTCATGTCC GAAATGGCATTTCAGCATAACAAAGTTGATGTGAAGGCTTGGATTGATCTCTATGCTACAAGACGTTATGGTCAACTAGTTCCTTTAATACAAGATGCTT GGAATATACTATATCACACAGTTTATAACTGTACTGATGGTGCCTATGACAAAAATAGAGATGTTATTGTGGCATTTCCTGATGTTGATCCTTCCTTCAT TTCAACACCGCTGGAGAAATACCTGGATGATGCCAAGCCGGCCCTAAGAAGATCAATTTTACAGCAAGGTGCGGGTTTATATGAGCAGCCCCATCTCTGG TATTCAACTTCAGAAGTTGTACATGCATTAAAACTTTTCATCAGCTGCGGTGATCAATTATCCGGAAGTAATGCCTACAGGTATGACCTAGTCGACTTGA CAAGGCAAGCTTTGGCAAAATACGCAAATGCACTGTTTCTAAAAATAACTAAAGCATACAAGTCGAAGAATGTGAATGGAGTAGCTGAGCAGTCTCGCAA GTTCGTGGAACTTGTGGAAGACATGGACTCTCTATTATCATGTCATGAAGGGTTTCTTCTTGGACCTTGGTTAGAGAGTGCAAAGCAGCTTGCAGAAGAT GAAGAACAAGAGAAACAGTTCGAGTGGAATGCAAGGACACAAATAACGATGTGGTATGACAACACCGAAGAGGAAGCAAGTCTTCTTCGTGACTACGGGA ACAAGTATTGGAGTGGGTTGGTGCGAGACTACTACGGACAAAGAGCAGCAATATATTTCAAGTACTTGTTAGAGAGCTTGGAGAATGACCATAGTTTCCG GCTCAAGGAGTGGCGGAGAGAGTGGATCAAGCTGACCAACCAGTGGCAGAATAGCCGGAAGAAATTTCCGGTGGCAAGTAACGGAGATGCACTCCTCTTG TCAACTCGGCTCTACGAGAAGTACTTGAAGGATTCTGCAGGCAATGCACATTATTATTATGACGAGTAA
AA sequence Show only first row Show all	>Lus10043468 pacid=23168237 polypeptide=Lus10043468 locus=Lus10043468.g ID=Lus10043468.BGIv1.0 annot-version=v1.0 MASPTPPPPQLLLLTVFFLLLSCILPPRQSAAAIGVDSISRLLEIQDRERASPSLQVAAARGVLHRLLPSHTSSFEFRIVSEEKCGGKSCFIISNHPYSA RHGAPDIMISGVTGVEIVAGLHWYLKYWCGAHISWGKTGGAQLNSVPRSGSLPRVQDDGVLVQRPVSWNYYQNAVSSSYTFAWWDWQRWEKEIDWMALHG INLPLAFTGQEAIWQKVFQKFNITKAGLDDFFGGPAFLAWSRMANLHGWGGPLPQSWLDQQLVMQKKILARMYELGMTPVLPAFSGNVPAALIDLFPSAK ITRLGNWFSVESNPRWCCTYLLDATDPLFIEIGKAFIEEQLKEYGRTSHIYNCDTFDENTPPVDDPEYVSSLGAATFKGMQAGDKDAIWLMQGWLFAYDD FWKPPQMKALLHSVPLGRLVVLDLYAEVKPIWSASEQFYGVPYIWCMLHNFAGNVEMYGVLDSVASGPVEARLSLNSTMVGVGMSMEGIEQNPIVYDLMS EMAFQHNKVDVKAWIDLYATRRYGQLVPLIQDAWNILYHTVYNCTDGAYDKNRDVIVAFPDVDPSFISTPLEKYLDDAKPALRRSILQQGAGLYEQPHLW YSTSEVVHALKLFISCGDQLSGSNAYRYDLVDLTRQALAKYANALFLKITKAYKSKNVNGVAEQSRKFVELVEDMDSLLSCHEGFLLGPWLESAKQLAED EEQEKQFEWNARTQITMWYDNTEEEASLLRDYGNKYWSGLVRDYYGQRAAIYFKYLLESLENDHSFRLKEWRREWIKLTNQWQNSRKKFPVASNGDALLL STRLYEKYLKDSAGNAHYYYDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10043468 [exp]	0	1
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020080 [exp]	1.7	0.8801
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001019 [exp]	2.2	0.8723
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10002893 [exp]	3.6	0.9071
AT1G19230			Riboflavin synthase-like super...		Lus10034890 [exp]	5.1	0.8806
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10028736 [exp]	9.2	0.8660
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Lus10029110 [exp]	9.8	0.8664
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10014712 [exp]	14.3	0.8124
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10001798 [exp]	15.0	0.8235
AT4G34770			SAUR-like auxin-responsive pro...		Lus10007562 [exp]	15.9	0.8766
AT5G14020			Endosomal targeting BRO1-like ...		Lus10035167 [exp]	21.2	0.8644

Compare expression of checked genes

Lus10043468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.