Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74920 792 / 0 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48170 785 / 0 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT3G24503 357 / 1e-118 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT3G48000 340 / 2e-111 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT1G23800 320 / 6e-104 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT1G79440 271 / 4e-85 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT2G24270 179 / 2e-50 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT3G66658 180 / 3e-50 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT1G54100 163 / 1e-44 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2) AT2G14170 155 / 1e-41 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034115 [exp] 877 / 0 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10042149 [exp] 804 / 0 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10042148 [exp] 728 / 0 AT1G74920 763 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10004239 [exp] 644 / 0 AT1G74920 667 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10004238 [exp] 511 / 0 AT1G74920 533 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10023626 [exp] 323 / 6e-105 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10029166 [exp] 318 / 5e-103 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10012999 [exp] 318 / 7e-103 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10023625 [exp] 311 / 8e-101 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G070600 [exp] 822 / 0 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G075600 [exp] 822 / 0 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G078700 [exp] 321 / 3e-104 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.015G074100 [exp] 321 / 4e-104 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.002G189900 [exp] 320 / 9e-104 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.018G075000 [exp] 317 / 3e-103 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.010G174000 [exp] 280 / 2e-88 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.008G106000 [exp] 188 / 5e-53 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.006G186800 [exp] 185 / 9e-53 AT2G24270 951 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.018G020600 [exp] 183 / 4e-52 AT2G24270 889 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10043470 pacid=23168438 polypeptide=Lus10043470 locus=Lus10043470.g ID=Lus10043470.BGIv1.0 annot-version=v1.0 ATGTCGATTCCAATTCCCACTCGACAGCTATACATCGACGGCGACTGGAGGCACCCGGCCCTCAACAAACGCATCCCAGTCATTAACCCTGCCACTGAAC AGATCGTCGGTGATATCCCAGCAGCTACAGCGGAAGATGTGGAGCTTGCAGTGGAAGCAGCTCAAAGAGCTTTCAATAGGAACAAAGGCAAAGATTGGGC TTTTGCCTCTGGAGCTTTCCGTGCAAAGTACCTGCGTGCTATTGCTGTTAAGGTGGTAGAGAAGAAAGAATTGCTAGCAAAACTTGAATCAATTGATTCT GGAAAACCTTACGATGAAGCAGCATGGGACATGGATGATGTTGCCGGGTGCTTCGACTACTATGCTGACCTAGCAGAAGGCCTAGACTCGAAGCAGAAGG CTCCTATTTCCCTTCCAATGGAAACATTCAAGTCTCATGTTCTTCAAGAACCACTTGGAGTCGTTGCATTGATCACTCCCTGGAATTACCCTTTGTTGAT GGCTTCGTGGAAAGTAGCTCCTGCTTTGGCTGCTGGGTGCACTGCAATACTGAAGCCATCTGAGCTGTCATCACTTACCTGCTTGGAGCTTGCTGCAATT TGTCGAGAAGTTGGCCTTCCTAGTGGCGTGCTCAATGTTCTTACAGGATTGGGTACGGATGCTGGTGCTCCTTTGGCAGCTCATCCCAATGTTGACAAGC CTGTTTCTATGGAGCTCGGTGGAAAGAGCCCAATTGTTGTGTTTGAGGATGTAGATCTTGATAAAGCTGCTGAATGGACCGCCTTCGGATGCTTCTGGAC CAATGGACAGATCTGCAGTGCTACATCCCGTCTTCTTGTACATGAAAGCATAGCTGCGAAATTCCTTGACAGGCTTGTCAAATGGGTGAAAAACATCAAA ATATCAGATCCCTTTGAAGAGGGTTGTAGGCTTGGTCCAGTTGTAAGTGGAGGGCAGTACGAGAAAGTTCTAAAATTCATCTCAAACGCTAAAAGAGAAG GTGCCACTATTTTGACTGGTGGTGCTCGCCCAAAGCATTTGAACAAGGGATTCTTCATCGAACCGACTATCATAAGTGATGTGACCACCTCCATGCAAAT CTGGAGAGAGGAAGTATTTGGCCCTGTTCTATGCGTTAAAACATTTAGCAGTGAAGATGAAGCCATTGAATTGGCTAATGACACGCAATATGGCTTGGCT GCTGCTGTGATCTCCAACGATGAGGAGAGGTGTGATCGTGTAAGCAAGGCTATTCGAGCCGGTATTGTGTGGGTGAACTGCTCGCAGCCATGTTTCTGCC AAGCACCTTGGGGTGGACTCAAGCGTAGTGGGTTTGGACGCGAACTAGGAGAATGGGGACTGAACAACTACTTGAGTGTGAAGCAAGTAACAAAATACAT CTCCAGAGATGCGTGGGGATGGTACAAATCTCCATCCAAGCTGTAA
AA sequence Show only first row Show all	>Lus10043470 pacid=23168438 polypeptide=Lus10043470 locus=Lus10043470.g ID=Lus10043470.BGIv1.0 annot-version=v1.0 MSIPIPTRQLYIDGDWRHPALNKRIPVINPATEQIVGDIPAATAEDVELAVEAAQRAFNRNKGKDWAFASGAFRAKYLRAIAVKVVEKKELLAKLESIDS GKPYDEAAWDMDDVAGCFDYYADLAEGLDSKQKAPISLPMETFKSHVLQEPLGVVALITPWNYPLLMASWKVAPALAAGCTAILKPSELSSLTCLELAAI CREVGLPSGVLNVLTGLGTDAGAPLAAHPNVDKPVSMELGGKSPIVVFEDVDLDKAAEWTAFGCFWTNGQICSATSRLLVHESIAAKFLDRLVKWVKNIK ISDPFEEGCRLGPVVSGGQYEKVLKFISNAKREGATILTGGARPKHLNKGFFIEPTIISDVTTSMQIWREEVFGPVLCVKTFSSEDEAIELANDTQYGLA AAVISNDEERCDRVSKAIRAGIVWVNCSQPCFCQAPWGGLKRSGFGRELGEWGLNNYLSVKQVTKYISRDAWGWYKSPSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10043470 [exp]	0	1
AT2G16060		ATGLB1, ARATHGL...	CLASS I HEMOGLOBIN, hemoglobin...		Lus10005467 [exp]	10.8	0.9052
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Lus10000496 [exp]	12.7	0.8972
AT1G70730		PGM2	phosphoglucomutase 2, Phosphog...		Lus10021777 [exp]	19.6	0.8949
AT3G52740			unknown protein		Lus10004872 [exp]	22.8	0.8955
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10031333 [exp]	25.0	0.8965
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10021245 [exp]	26.5	0.8197
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040278 [exp]	26.7	0.8811
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10011143 [exp]	29.0	0.8896
AT1G01290		CNX3	cofactor of nitrate reductase ...		Lus10036661 [exp]	37.8	0.8766
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10000883 [exp]	41.8	0.8293

Compare expression of checked genes

Lus10043470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.