Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71020 643 / 0 ARM repeat superfamily protein (.1.2) AT1G23030 630 / 0 PUB11 ARM repeat superfamily protein (.1) AT3G46510 456 / 6e-153 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G54850 434 / 2e-144 ATPUB14 plant U-box 14 (.1) AT2G28830 412 / 3e-132 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 337 / 1e-106 PUB15 Plant U-Box 15 (.1) AT3G07360 250 / 4e-76 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT1G29340 249 / 3e-73 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT5G67340 237 / 8e-69 ARM repeat superfamily protein (.1) AT2G23140 239 / 1e-68 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034113 [exp] 1054 / 0 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10037970 [exp] 439 / 1e-146 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10040834 [exp] 430 / 1e-142 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10016565 [exp] 429 / 6e-142 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10012260 [exp] 366 / 6e-118 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10016016 [exp] 366 / 7e-118 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10007511 [exp] 320 / 4e-100 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 308 / 1e-95 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10009594 [exp] 276 / 6e-86 AT3G07360 482 / 2e-168 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G113900 [exp] 773 / 0 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.008G128600 [exp] 768 / 0 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.001G238500 [exp] 453 / 1e-151 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 448 / 3e-150 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G226500 [exp] 444 / 1e-148 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.009G029600 [exp] 431 / 4e-143 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.002G009900 [exp] 389 / 9e-127 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.009G165900 [exp] 387 / 3e-126 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.004G205000 [exp] 355 / 7e-114 AT5G42340 654 / 0.0 Plant U-Box 15 (.1) Potri.008G071600 [exp] 291 / 3e-89 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain CL0020 [flax] [poplar] TPR PF05804 [flax] [poplar] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Lus10043471 pacid=23168211 polypeptide=Lus10043471 locus=Lus10043471.g ID=Lus10043471.BGIv1.0 annot-version=v1.0 ATGGCCGGAGGCGGCAGCGGTGGTCCTGTACTAGACCACGCCACCCCCGCCGCGGGACTCCTGCTCCAGCTCGTGCGGGACATTATGGGCGGGAACGGAT GCGCTACTGCGCCGCCGCCTTCGGGTTCTTCGCTGTTTAGGAAGGACTGCATGGATCTGGTGCGGAGGATTTCCTTGCTGACTCATTTCCTCGAGGAGAT TGCTGATTCCGTCGGCGAATCTGGATTGTTGGATGATCCTTCGAGGTCTCGCGGTTCTTCTAGGAGCTGGTGCTCTTCTCTGCTTGCTGCTCTTCAGGCT GCTAAGCGCTTGCTCACCGTTGCTTCCAGTTCTAAGTCCTCTAGCCATACTGATGGAGCTTACTGCAAGATTGCTCTTCAGTTTCGGTCTGTAACGTGCA AGCTTGAGAAGGCTTTAGGTGAAATCCCCTTTAGTCAGTTCAACATCTCAGAGGAAGTACAAGAACAGGTAGCATTGGTGAGGTCGCAATTGCAAAGAGC GTCCGAGAGATACAGGTTTGTGAATGCTGAAACAACAACCTCTTCAGCATCAGCAGCTCAACCACCAGTTCTGCAAAAGAACAATAGGTTGAACAGAAGC TGGAAGATTGAAGACGTTGGATGCATTAATCATGATGAAACCAGTGATGCTGATCAAGCCCCGGGAGAGATCAATGGAGCTGCAGAGGAAGGGAAGGTTG ATTCAGTTAAAAAGAGTCTCGAAGACTTGAAGAAGGCCGATGCACCCACAATCCCTGACGACTTTCTGTGTCCTATTTCCCTTGAATTGATGAGAGATCC TGTCATTGTTGCCACAGGACAGACTTACGAGAGGTCCTTCATACAAAGATGGATAGACGCAGGGAACATAACATGTCCCAAAACTCAACAGAAGCTTCAA CATTCAACATTAACACCCAATTACGTCCTGAGAAGCCTCATTGCTCAATGGTGCACGAAGCACAACATCGAGCAGCCAACGGGGTTCACAAACAACGGGA GGATGATAAAAAAGAGCGACGGCTCTTTCCGCGATGTAACCGGGGACATAGCCGCGATCCAAGCAGTAGTACGCAAGCTTTCGAGCCGGTGCATCGAGGA TCGTCGAGCTGCCGTCTCTGAAATCCGAACTCTATCCAAGAGAAGCACTGATAACAGAATCCTAATAGCAGAAGCAGGAGCAATTCCTGTTCTAGTCGGC CTACTAACAGCAGAAGACGTCTCGATCCATGAAAACGCAGTCACATCGATCCTAAACCTCTCCATCCACGAGAGCAACAAAGGGCTAATCATGCTTGCAG GTGCAATACCTTCCATAGTCCAAGTTCTACGAGCCGGCAGCGTAGAAGCCAAGGAGAACTCCGCAGCAACTCTTTTCAGCTTGTCGTTGGGGGACGAGAA CAAGATCATAATCGGAGCATCGGGAGCGATTCCAGCTCTGGTGGAGCTGCTTGTGAACGGAAGCACGCGAGGGAAGAAAGATGCAGCATCAGCATTGTTC AATCTGTGCATATACCAAGGGAACAAAGGGAGGGCAGTTAGAGCAGGGATAATCCCTGCATTGCTGAGAATGCTGACCGATTCCAGGAGTGTGATGGTGG ACGAAGCTCTGACGATTCTTTCGGTGCTGTCGAGTAATCCGGAGGCGAAAGGGGCGATTGTGAAGGCGAGCACGATCCCTGTACTGATAGATGTGTTGAG AACGGGTCAGCCGAGGAGTAAAGAGAACGCCGCGTCGATATTGCTGTCGCTGTGTAAAAGGGATGCGGAGAATCTGGGCTGTATAAGCAGGCTGGGAGCT GTGGTGCCGTTGACAGAGCTTACCAAGAGCGGGACGGAGCGGGCTAAGCGGAAAGCTGGTTCCTTGTTGGAGCACGTTAGGAAGATGAGTCAGCATCAGC ATCAACATCAGCATCACCACCAATAA
AA sequence Show only first row Show all	>Lus10043471 pacid=23168211 polypeptide=Lus10043471 locus=Lus10043471.g ID=Lus10043471.BGIv1.0 annot-version=v1.0 MAGGGSGGPVLDHATPAAGLLLQLVRDIMGGNGCATAPPPSGSSLFRKDCMDLVRRISLLTHFLEEIADSVGESGLLDDPSRSRGSSRSWCSSLLAALQA AKRLLTVASSSKSSSHTDGAYCKIALQFRSVTCKLEKALGEIPFSQFNISEEVQEQVALVRSQLQRASERYRFVNAETTTSSASAAQPPVLQKNNRLNRS WKIEDVGCINHDETSDADQAPGEINGAAEEGKVDSVKKSLEDLKKADAPTIPDDFLCPISLELMRDPVIVATGQTYERSFIQRWIDAGNITCPKTQQKLQ HSTLTPNYVLRSLIAQWCTKHNIEQPTGFTNNGRMIKKSDGSFRDVTGDIAAIQAVVRKLSSRCIEDRRAAVSEIRTLSKRSTDNRILIAEAGAIPVLVG LLTAEDVSIHENAVTSILNLSIHESNKGLIMLAGAIPSIVQVLRAGSVEAKENSAATLFSLSLGDENKIIIGASGAIPALVELLVNGSTRGKKDAASALF NLCIYQGNKGRAVRAGIIPALLRMLTDSRSVMVDEALTILSVLSSNPEAKGAIVKASTIPVLIDVLRTGQPRSKENAASILLSLCKRDAENLGCISRLGA VVPLTELTKSGTERAKRKAGSLLEHVRKMSQHQHQHQHHHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71020			ARM repeat superfamily protein...		Lus10043471 [exp]	0	1
AT5G21105			Plant L-ascorbate oxidase (.1....		Lus10026753 [exp]	1.0	0.9362
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028583 [exp]	3.5	0.8960
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10006391 [exp]	7.3	0.8781
AT5G56040			Leucine-rich receptor-like pro...		Lus10042090 [exp]	11.7	0.8282
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Lus10023886 [exp]	12.4	0.8940
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028582 [exp]	16.0	0.8790
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10016492 [exp]	17.1	0.8833
AT5G40150			Peroxidase superfamily protein...		Lus10039445 [exp]	18.0	0.8652
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Lus10020521 [exp]	18.2	0.8728
					Lus10025731 [exp]	18.7	0.8799

Compare expression of checked genes

Lus10043471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.