Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01340 127 / 9e-37 At17.1 unknown protein AT1G66480 123 / 5e-35 PMI2 plastid movement impaired 2 (.1) AT5G37840 122 / 1e-34 unknown protein AT1G71015 110 / 2e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036005 [exp] 166 / 2e-51 AT2G01340 174 / 2e-54 unknown protein Lus10016709 [exp] 127 / 7e-37 AT2G01340 147 / 7e-45 unknown protein Lus10009120 [exp] 106 / 1e-27 AT4G18975 198 / 1e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4) Lus10008274 [exp] 40 / 0.0004 AT1G64700 118 / 9e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G113800 [exp] 147 / 4e-44 AT2G01340 207 / 1e-67 unknown protein Potri.008G128700 [exp] 145 / 8e-44 AT2G01340 206 / 3e-67 unknown protein Potri.017G128800 [exp] 132 / 9e-39 AT1G66480 192 / 8e-62 plastid movement impaired 2 (.1) Potri.004G088200 [exp] 121 / 3e-34 AT2G01340 179 / 1e-56 unknown protein Potri.016G079700 [exp] 50 / 6e-08 AT3G10120 114 / 1e-32 unknown protein Potri.006G213100 [exp] 41 / 0.0001 AT3G10120 122 / 9e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043472 pacid=23168317 polypeptide=Lus10043472 locus=Lus10043472.g ID=Lus10043472.BGIv1.0 annot-version=v1.0 ATGGGCAACATCATAGCATCATCCAAATCCAATAGAGCACAACTCATGAACATCGACGGCCAAACCACGAACCTTAAACTCCCCATTCGAGCCCACGACG TGACCAGCGATTACCCGGACCACGTCCTTCTTGAATCGGAATCGGTCAGGCGATACGGGCCACTAGCCGAGCCCCTTGACCCGAACCAAAATTTACTCCC CAAGCGGCTATACTTCCTCGTGGAGCTCCCCAAAACGTCACCGTACCAATCGAGATCGGGGCCCATGCACGTGAGCGCCAAGGAAAGACTGGAGAGACTG ATGCTGGCGAAGAGATCGTCCACGTCAGCCTCGGCTTCACCCTCATCCTCCGGGGAGCTCGGGACGACGATGAGGGTGAAGATGAGGCTTCCGAGGAAGG AGGTGGAGAGATTGATGAGGGAGAGTGGAGATGAAAGGGATGCAGCTGCTAGGATTCTGGAACTGTACGTAAATAACGGCTGGGGGGGGGGGGGCGGTAG CGTCTGTGGTGGCGCCGCCGGAGTGATGAAGTCGCCGGCACACAAGAAGCGAGTGAGTTTCCCAGGACTTGATGCAGCCGAGAAGCCGAATAGATCATAG
AA sequence Show only first row Show all	>Lus10043472 pacid=23168317 polypeptide=Lus10043472 locus=Lus10043472.g ID=Lus10043472.BGIv1.0 annot-version=v1.0 MGNIIASSKSNRAQLMNIDGQTTNLKLPIRAHDVTSDYPDHVLLESESVRRYGPLAEPLDPNQNLLPKRLYFLVELPKTSPYQSRSGPMHVSAKERLERL MLAKRSSTSASASPSSSGELGTTMRVKMRLPRKEVERLMRESGDERDAAARILELYVNNGWGGGGGSVCGGAAGVMKSPAHKKRVSFPGLDAAEKPNRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37840			unknown protein		Lus10043472 [exp]	0	1
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	10.8	0.8788
					Lus10007078 [exp]	13.3	0.7619
AT4G23030			MATE efflux family protein (.1...		Lus10017836 [exp]	14.5	0.8405
AT5G10530			Concanavalin A-like lectin pro...		Lus10004279 [exp]	15.0	0.8754
AT4G10300			RmlC-like cupins superfamily p...		Lus10035660 [exp]	29.9	0.8557
AT5G43200			Zinc finger, C3HC4 type (RING ...		Lus10019685 [exp]	31.3	0.8371
AT5G05340			Peroxidase superfamily protein...		Lus10034207 [exp]	31.4	0.8536
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033735 [exp]	32.9	0.8484
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014108 [exp]	38.1	0.8422
AT2G19500		ATCKX2, CKX2	cytokinin oxidase 2 (.1)		Lus10031200 [exp]	45.0	0.8262

Compare expression of checked genes

Lus10043472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.