Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15440 995 / 0 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT3G49660 96 / 3e-21 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 93 / 3e-20 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 93 / 4e-19 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 92 / 8e-19 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G41500 87 / 2e-17 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT4G15900 86 / 2e-17 PRL1 pleiotropic regulatory locus 1 (.1) AT5G08390 87 / 3e-17 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 87 / 3e-17 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G67320 86 / 4e-17 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034114 [exp] 1358 / 0 AT1G15440 1318 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10014674 [exp] 103 / 6e-24 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 99 / 2e-22 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 97 / 2e-21 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 95 / 8e-21 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10030869 [exp] 94 / 1e-19 AT1G10580 939 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10030620 [exp] 93 / 2e-19 AT1G10580 926 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 92 / 8e-19 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021059 [exp] 90 / 3e-18 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G173500 [exp] 1128 / 0 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.003G060500 [exp] 1127 / 0 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.002G051900 [exp] 111 / 1e-26 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 94 / 1e-20 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 93 / 3e-20 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G050100 [exp] 91 / 1e-18 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.005G144400 [exp] 91 / 1e-18 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.010G255400 [exp] 91 / 2e-18 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 89 / 5e-18 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 85 / 1e-17 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF04003 [flax] [poplar] Utp12 Dip2/Utp12 Family
Representative CDS sequence Show only first row Show all	>Lus10043473 pacid=23168297 polypeptide=Lus10043473 locus=Lus10043473.g ID=Lus10043473.BGIv1.0 annot-version=v1.0 ATGAATTATAGATTTCAAAATCTGCTGGGAGCTCCTTACAGGGGAGGAAACGCTGTTGTCATTCAGGATACTCAGCTAGTCTCTTCCGTTGGAAATCGTG TCTCCATAACGGACCTTCTAAAGTCCCAAACAATCACACTTCCCTTTCAATCATCATCAAACCTACGCTGCATTGCTGCCTCACCTGATGGAACATTTCT CCTCACTGTTGATGAGAACAATCGTGCTCAGTTCTTGAACATTCCACTTGGACACAGAGATACTGTTGTTGGTTGCTTCTTTGGATACAGTAAGAATAGT CATACACCAAATAAAGCTTACACCGTTGCACGCGATGGTTATATCTTTAGTTGGGGTTATGGTGGCCATGTTGACATGGAAGATCATCAGAACTCTGAGC CTCTTTCACCAGGAACACCAGAAAAAGACGGGAAAGAAATTTTGAGTGGTGAATCTGAACATAAGACAAAGAAACAAAGGACTCTTGACGTGAAAGAGGC TGATAATTCCTCGAAGGAGTACCTACACAAGGGGAGATGGGAGTTGCTCCGCAAAGATGGATTTATGCAATCGCCAGCAAAAGTCACTTCTTGCGATTAC CATAGGATATTGGATATGGTTGTGGTGGGATTTTCTAGTGGTGTTTTTGGGCTTTATCAAATGCCAGACTTCGTATGTATCCACCTGCTGTCGATTTCAA GGGAGAAGATCACTACTGCTGTGTTTAATGGGATTGGTAATTGGCTAACTTTTGGTTGTGCAAAGTTGCGGCAATTACTTGTATGGGAATGGAGGTCAGA AAGTTATGTCTTGAAGCAACAAGGCCACTATTTTGATGTTAACTGTTTGGCTTATTCGCCAGATTCTCAATTGCTGGCTACCGGAGCAGATGATAACAAA GTTAAGGTGTGGACTGTTTCATCAGGTTTTTGCTTTGTAACATTCTCGGAGCACACTAATGCTGTTACAGCCCTTCATTTTTTGTCTAATAACCACTGTC TGTTGAGTGCCTCTCTAGATGGGACTGTACGTGCATGGGATTTGTTCCGCTATCGTAATTTTCGGACATTCACCACACCATCATCAAGACAATTTGTTTC CTTGGCAGCTGATGGAAGTGGTGAAGTTATTTGTGCTGGAACTCTAGATTCCTTTGAGATATTTGTATGGTCAATGAAGACTGGGCGTTTGTTGGATGTG CTTAGTGGTCATGAAGGTCCTGTTCATGGCTTAATGTTTTCTCCAGTTAATGGAAACTTGGCGTCATCTTCATGGGACAAAACTGTTCGTCTGTGGGATA TTTATGAAGGAAGAAGCGCAGTTGAAACATTCTCTCACACTCATGATGTTCTGACAGTGGTTTATCGTCCAGATGGAAAGCAATTGGCAAGCAGCACATT GGACGGTCAAATTAATTTATGGGATCCAATTGATGGCATTCTAATGTACACAATTGAAGGGCGAAGGGATATTGCTGGAGGCCGCCTCATGACTGATCGC AGATCAGCTGCAAATTCAACAGCGGGAAAATGCTTCACAACATTAAGCTACTCTGCCGATGGGAGTTATATTTTGGCAGGTGGTAGTAGCAAATATATAT GCATGTATGACATTGCTGATCAGGTCCTGCTGCGTCGCTTTCAAATAACAATTAACCTCTCGATGGATGGAGTACATGACTTCTTAAACTCCAAGAGAAT GACGGATGCTGGTCCGCTTGACTTAATTGATGATGACGACTCTGATATGGAGGAAGGTATCGATGTACAAACTCGGGGAAAATTGGGTGGTGACTTACCG GGGTCCACTCCAAATCGAGGAAAGCCTATAATTCGAACAAAAGACCTCAAGATTGCACCCACAGGGGGGAGCTTTTCTGTTGCAACAACAGAAGGGGTTC TAGTTTATTCAGTTGACGTATCTTTCTTATTTGATCCCACTGATCTGGGCATAGATGTCACACCACAAACTGTCAATGAAGCACTGGCTGAAAATCAACC AAGTAGAGGTCTAATCCTCAGCTTACGACTGAATGAGGATTCGTTGAACAAAAAATGCGTGTTTGCTGTGAGTACGGCTGATGTGCCAGCTGTTGCCTCA TCAATTCCTCACAGATACCTGCAACGGTTAATCGATGTACTAGCTAATCTCTTGGAAAGTTGCCCTCATCTGGAGTTTGTTCTTAACTGGTGTCAGGAGC TATGCAAAGCTCACGGCAACTCAATCCAACAGAACTCGAGACAACTCCTTCCTGCTCTAAAATACCTGCAGAAGGCAACCACCAGAATACATCAGGACTT GGCAGATACATGTTCGGCCAACGAATATATGCTGAACTATTTGTGCTCTACGCCACATACAAGTGAAGCCAGCAGCTGTCTCATGGATTCATCGGCCTAA
AA sequence Show only first row Show all	>Lus10043473 pacid=23168297 polypeptide=Lus10043473 locus=Lus10043473.g ID=Lus10043473.BGIv1.0 annot-version=v1.0 MNYRFQNLLGAPYRGGNAVVIQDTQLVSSVGNRVSITDLLKSQTITLPFQSSSNLRCIAASPDGTFLLTVDENNRAQFLNIPLGHRDTVVGCFFGYSKNS HTPNKAYTVARDGYIFSWGYGGHVDMEDHQNSEPLSPGTPEKDGKEILSGESEHKTKKQRTLDVKEADNSSKEYLHKGRWELLRKDGFMQSPAKVTSCDY HRILDMVVVGFSSGVFGLYQMPDFVCIHLLSISREKITTAVFNGIGNWLTFGCAKLRQLLVWEWRSESYVLKQQGHYFDVNCLAYSPDSQLLATGADDNK VKVWTVSSGFCFVTFSEHTNAVTALHFLSNNHCLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAADGSGEVICAGTLDSFEIFVWSMKTGRLLDV LSGHEGPVHGLMFSPVNGNLASSSWDKTVRLWDIYEGRSAVETFSHTHDVLTVVYRPDGKQLASSTLDGQINLWDPIDGILMYTIEGRRDIAGGRLMTDR RSAANSTAGKCFTTLSYSADGSYILAGGSSKYICMYDIADQVLLRRFQITINLSMDGVHDFLNSKRMTDAGPLDLIDDDDSDMEEGIDVQTRGKLGGDLP GSTPNRGKPIIRTKDLKIAPTGGSFSVATTEGVLVYSVDVSFLFDPTDLGIDVTPQTVNEALAENQPSRGLILSLRLNEDSLNKKCVFAVSTADVPAVAS SIPHRYLQRLIDVLANLLESCPHLEFVLNWCQELCKAHGNSIQQNSRQLLPALKYLQKATTRIHQDLADTCSANEYMLNYLCSTPHTSEASSCLMDSSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10043473 [exp]	0	1
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10027934 [exp]	4.0	0.9527
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10012048 [exp]	4.7	0.9560
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10005351 [exp]	5.4	0.9242
AT1G65710			unknown protein		Lus10031373 [exp]	6.0	0.9425
AT3G21540			transducin family protein / WD...		Lus10033802 [exp]	6.9	0.9280
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Lus10043295 [exp]	8.9	0.9395
AT3G11964			RNA binding;RNA binding (.1)		Lus10029327 [exp]	9.5	0.9418
AT3G55160			unknown protein		Lus10015366 [exp]	9.6	0.9418
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10005385 [exp]	10.4	0.9332
AT2G34357			ARM repeat superfamily protein...		Lus10021944 [exp]	10.5	0.9376

Compare expression of checked genes

Lus10043473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.