Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59770 1937 / 0 AtSAC9, SAC9 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) AT1G17340 99 / 2e-20 Phosphoinositide phosphatase family protein (.1) AT5G20840 85 / 2e-16 Phosphoinositide phosphatase family protein (.1) AT3G43220 82 / 3e-15 Phosphoinositide phosphatase family protein (.1.2) AT1G22620 79 / 3e-14 ATSAC1 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) AT3G14205 72 / 3e-12 Phosphoinositide phosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034113 [exp] 2796 / 0 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10013184 [exp] 85 / 4e-16 AT3G14205 923 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10039913 [exp] 84 / 5e-16 AT3G43220 842 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10027650 [exp] 84 / 9e-16 AT3G43220 936 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10037446 [exp] 84 / 1e-15 AT3G14205 947 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10014827 [exp] 74 / 7e-13 AT1G22620 1389 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G128500 [exp] 2109 / 0 AT3G59770 2267 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Potri.003G071300 [exp] 95 / 2e-19 AT3G14205 1011 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.001G163900 [exp] 83 / 1e-15 AT3G14205 987 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.006G136400 [exp] 80 / 1e-14 AT3G43220 1018 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.013G107950 [exp] 79 / 2e-14 AT1G22620 1355 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.019G080300 [exp] 76 / 2e-13 AT1G22620 1397 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.018G063700 [exp] 73 / 2e-12 AT3G43220 1043 / 0.0 Phosphoinositide phosphatase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF02383 [flax] [poplar] Syja_N SacI homology domain CL0680 [flax] [poplar] WW PF00397 [flax] [poplar] WW WW domain
Representative CDS sequence Show only first row Show all	>Lus10043474 pacid=23168168 polypeptide=Lus10043474 locus=Lus10043474.g ID=Lus10043474.BGIv1.0 annot-version=v1.0 ATGGATCACAATGAGAACACCCTGAAGCGCCTCAATTCTGTTGGTGCTTCAAGAAACACATCTGTTGTTGTTGTTACGCTAGAAACCGGTGAAGTAAATA TTATTGTAAGCTTATCTTCCAGGGCAGACACCCAAGTGATATATATCGACCCAACGAGTGGTGCACTTCGTTACACGGGGAAGCTAGGTGCTGATCTTTT TAGCTCAGAAAATGAAGCTTTCGATCACATTACAAATGCATCAAAATGGCAATGCCGGAGTACAATTCATGCAAGGGCAATATTAGGTTATGCTGCCCTT GGAAGCTACGAACGTCGTGCCGACGGGGAAGTAAGCGTAAGACTCAAGATAGAGTATAAGCAGCGGCCGCGGCCGTTGCTGGAGCTAGCTGAGTTCGTTT TTCTGCACACCGGAGGAAGCAAGCAGCAGGGGGCGAGAGGCAGAAAGAAATACATAGATTTCAGTCCAAAGGAGATCAAAGTTCCTTTCTTGCCATCTCG TAATTCCCATCTAGACGGCTTTGCAGAATGTCGAAACTTCGGAAGCTTGGGTCAGTTAGAAGGGGTTGTTGCTCTCACGGCTCGTCGTAGTAGGCTACAT CCTGGGACTCGATACTTAGCTAGAGGGTTGAATTCTTGTTTCAGCACAGGAAATGAAGTGGAGTGTGAGCAACTAGTTTGGGTGCCTAAAAAGAGTGCTC AAAGTGTCCCCTTTAATACATATATTTGGCGACGTGGCACAATTCCAATATGGTGGGGTGCAGAATTAAAGATTACTGCTGCAGAAGCAGAAATTTATGT TTCAGGCAGGACTCCTTACAAAGGAAGCTTGGATTACTATAACAGATTAAGCAGGCGGTATGATGCTAGGAATTTAGACGTAGGTCTTGGTGAAGGTCAG AAGAAAAAGGCTTTTGTTCCGATTGTCTGTATCAACCTACTTAGAAATGGGGAAGGAAAATCTGAGTCTATTCTAGTTCAACATTTTGAGGAATCACTAA ACTATATTAGATCAACCCGGAAACTTCCCCATGCCAGAATACATCTGATAAATTATGATTGGCATGCTAGTACAAAGTTAAAAGGTGAACAGAGAACTGT TGAAGAACTTTGGAAACTTCTAGAAGCACCCACTATGGCCATTGGCATTTCAGAAGGTGATTACCTACCTTCACGACAGCGACTAAATGAGTGCAAAGGT GAAATTGTCTGCACTGACAATTACGTGGGGGCTTTCTGCCTAAGAACACATCAAAATGGGGCATTACGTTTTAACTGTGCTGATTCGTTGGACAGAACGA ATGCTGCTAGTTACTTCGGTGCTCTCCAAGTTTTTGTGGAACAATGTAGAAGGCTGGCCATATCCCTAGATAGTGATTTGGCATATGGTCATCTTTCTCC TAGTAATTATGGCGGATACACAGCTCCCTTGCCATTAGGCTGGGAGAAACGGTCTGATGCAGTGACGGGGAAAACATATTACATTGATCATAATACGAGG ACCACAACGTGGAGTCATCCTTGCCCAGATAGACCTTGGAAGAGATTTCAGATGTCTTTTGAGGAGTTTAAGAGGTCAACAATTTTATCTCCTGTGTCAC TGCTTGCTGATCTTTTCCTTCTTGCTGGAGATATACATGCAACACTGTACACGGGTTCTAAGGCTATGCATAGTCAAATATTAAGCATATTTAGTGAAGA AGTATCAAAATTTAAACAACTATCTGCAGCTCAGAACATGAAAATAACTCTACAGAGAAGGTACAAGAATGCTGTTGTAGATAGCTCTCGCCAGAAGCAG TTGGAAATGTTTCTTGGAATGAGGTTCTTCAAGCACCTTCCATCAATTCCAATCCAACCTTTAAATGTGCCTTCTAGACCAACCGGTTTCTCTCTCAAGC CTGTGACAAACATATCCGGGAGTTCTACTGATGCATCTGTTCTTTTGAGCTTCAAAAGAAAAAACCTTACTTGGGTGACTCAACAAGATGCAGATGTGGT TGAGCTCTTTATCTATCTCGGGGAGCCCTGTCATGTCTGCCAGCTTCTTCTAACAGTATCCCATGGTGCAGATGATTCAACTTGTCCATCAACCGTTGAT GTCAGAACAGGGCGCTCGCTAGATGGACTTAAGTTGGTTGTGGAGGGTGCTTCCATACCTCAGTGTGCAAATGGGACAAACCTCTTGGTATCATTACCAG GACCAATTAGTTCAGAGGACATGGCTATCACTGGAGCTGGTGCACGTCTTCATGCTCAGGACACTTCAAACCTCTCATTATTGTACGAGTTTGAAGAAGT AGAAGGAAAATTGGACTTTCTTACTCGTGTTGTGGCAGTAACTTTTTATCCAGCTATTTCTGGAAAAGGTCCAATGACTATTGGTGAGATAGAAATCCTT GGAGTTTCTCTTCCATGGAGGAGTATATTTGATAATGAGGGACCTGGTGTAAGGATACTTCAACTTTCCAAACAAGTTCAGAAGGAACCCAACCCATTCA TGGCTGATCTTAGTGTGAATCCACGTTCTGGAGAAACTTCATATGATTTAGCAGTTCCACCATCATCGGGACAAAATGCTTCTGGAAATTGGATTGATCT TCTGTCCGGAGAAGATTCAACATCAATTCCACACCCTCTGGCAGAAAATTATAGGCCCGGTGGAAGTGATTTGCTTGATTTCTTGGGTGAAGCTACTATT GAAAACCATGATGTTAAGATAGAACATGACATCTCCACGGTGCAAGTTGCAAAGAATGTAGATGGTGGTACAGAAAAATACATTGACTCTTTGAAGTTCC TTGAAGGGTCTCAAATGGGCCGGAAATTGGATTTCGTAGAAGCTATGAAACTTGAAATTCAACGGCTCCGACTGAATCTTTCAGCTGCTGAAAGGGATAG AGCTTTGCTGTCGATCGGAATTGATCCTGCTTCGATAAATCCAAATGCTTTAATTGATGCATCGTACGTTGGAAGACTAATCAGGGTTGCGAAAACCCTT GCAGTTCTTGCTCAAGTCTCTCATGAAGATAAACTCAATGCTGCTATCGGTCTTGGCGACATAAATGAGGATATCATAGATTTCTGGAATGTCTCTGGAA TCGGAGAGTGTTGTTCTGGTGGTAAGTGCGAGGTTCATGCCGAGAAAGGAACTTCTTATCGTCATTCTCCCGAGTTGTCATCAACAGGAAATGAGCAATC AATACTTCTATGCTCCCAATGTAAAAAAAAGGCATGTAAAGTTTGTTGTGCTGGACAAGGAGCTCTCTTGCTGGCAAGCTACAACTCAATGGATGCGAGC TACAATGGTCTTGCAAGTCCAACAGGCTATGGAAGCCAAGCTGATGGCGTTGCAAATCGTGTCGTGCCACTAGATGGTGTTATTTGTAAATGTTGTTGCC ATAAGATAGTGCTTGATGCTTTACTCGTGGACTATGTTAGAGTGTTGATTACCCTGAGAAGGAAAGACAGGGCAGATAATGCAGCTTGTCAAGCTCTGGA CCAAATTATAGGATCTTCTTACAAGATTTCCATTCCTAATCCAGCTAGGTCCGTACACAAATTACTGTCTGGAGAGGAATCACTTGCTGAATTTCCGTTT GGTAGCTTCTTACACTCGGTTGAAACAGCTAAAGATTCTGCTCCATTTTTGTCTTTGCTTGCTCCGTTGGATACTGGGCTACAAAACTCATATTGGAAAG CGCCTCCTTCAGCCAATTCTGTTGAACTTATTATTGCTCTCGGTACCCTCTCCGATGTCAGTGGAGTTGTATTGCTCGTCAGTCCCTGTGGCTATTCTGC AGCTGATGCTCCCAGTGTTCAAGTTTGGGCCAGCAATAAACTGGAGAATGAAGAAAGGTCATGTGTGGGGAAATGGGACATACAGTCCATGGCCACTTCG TCCTCGGAACTTTATGGACCCGAAAGAGTAGAGGCCAGCGGTGAAGTTGCCAGGCATGTTAAATTCTCGTTCAAGAACGTTGTCAGATGCCGTATCATAT GGATAACATTGCGTCTTCCTCGAGCGGGATCAAGTTCAGTCAATATTCCTAAAGACTTCAATCTGTTATCTCTTGATGAGAACCCCTTTGCCGAAGTAGA TAGGCGAGCTTCTTTTGGCGGAGGTCCCGATACTCTACCATGCCTTCATGCTAGGAGAATTCTAGTTCTCGGGAAGTCGGTGAAAAAAGAGGCACAAAGT ACGGACACTGTCAATTTGAATGGTTGGCTCGATAGACCTCCGCAACTGAACAGATTCAAGATTCAAATTGAGGTCGAGAGGCTAATCGACAGCGATCTAA CCTTGGAACAGTGTTTGCCTCCATCTTCCCCTTTTCTTGGAGGATTTCGGCTCGATGCTTTCTCTGCAATAAAGCCACGAGTTATCCATTCACCATCTTC AGATTTAGACATGTGTGATACATCAGCAACGTTTCTAGAAGGCAGACATATATCTCCTGCTGTTCTTCATATCCAAGTAACTGCAATCCAGGAACCAAAC AAGTTGGTAACCATTGGAGAATACAGATTGCCAGAGGCCAAGGCTGGAACAGCAATGTACTTTGATTTCCCAAGGCAAATGCAAACCCGGAGGGTGACAT TCCGGCTCCTTGGCGATATTGGTGCATTCACCGACGATCCGGCAGAATCGGACGATTCTGGAACAAGGAATCTACCAGTGGCAGCAGGTTTGTCATTAGC AAACAGAATAAAGCTTTATCACTATGGTGATCCTTACGAACTTGGGAAGTGGGCTAGTCTTTCTGCCATTTGA
AA sequence Show only first row Show all	>Lus10043474 pacid=23168168 polypeptide=Lus10043474 locus=Lus10043474.g ID=Lus10043474.BGIv1.0 annot-version=v1.0 MDHNENTLKRLNSVGASRNTSVVVVTLETGEVNIIVSLSSRADTQVIYIDPTSGALRYTGKLGADLFSSENEAFDHITNASKWQCRSTIHARAILGYAAL GSYERRADGEVSVRLKIEYKQRPRPLLELAEFVFLHTGGSKQQGARGRKKYIDFSPKEIKVPFLPSRNSHLDGFAECRNFGSLGQLEGVVALTARRSRLH PGTRYLARGLNSCFSTGNEVECEQLVWVPKKSAQSVPFNTYIWRRGTIPIWWGAELKITAAEAEIYVSGRTPYKGSLDYYNRLSRRYDARNLDVGLGEGQ KKKAFVPIVCINLLRNGEGKSESILVQHFEESLNYIRSTRKLPHARIHLINYDWHASTKLKGEQRTVEELWKLLEAPTMAIGISEGDYLPSRQRLNECKG EIVCTDNYVGAFCLRTHQNGALRFNCADSLDRTNAASYFGALQVFVEQCRRLAISLDSDLAYGHLSPSNYGGYTAPLPLGWEKRSDAVTGKTYYIDHNTR TTTWSHPCPDRPWKRFQMSFEEFKRSTILSPVSLLADLFLLAGDIHATLYTGSKAMHSQILSIFSEEVSKFKQLSAAQNMKITLQRRYKNAVVDSSRQKQ LEMFLGMRFFKHLPSIPIQPLNVPSRPTGFSLKPVTNISGSSTDASVLLSFKRKNLTWVTQQDADVVELFIYLGEPCHVCQLLLTVSHGADDSTCPSTVD VRTGRSLDGLKLVVEGASIPQCANGTNLLVSLPGPISSEDMAITGAGARLHAQDTSNLSLLYEFEEVEGKLDFLTRVVAVTFYPAISGKGPMTIGEIEIL GVSLPWRSIFDNEGPGVRILQLSKQVQKEPNPFMADLSVNPRSGETSYDLAVPPSSGQNASGNWIDLLSGEDSTSIPHPLAENYRPGGSDLLDFLGEATI ENHDVKIEHDISTVQVAKNVDGGTEKYIDSLKFLEGSQMGRKLDFVEAMKLEIQRLRLNLSAAERDRALLSIGIDPASINPNALIDASYVGRLIRVAKTL AVLAQVSHEDKLNAAIGLGDINEDIIDFWNVSGIGECCSGGKCEVHAEKGTSYRHSPELSSTGNEQSILLCSQCKKKACKVCCAGQGALLLASYNSMDAS YNGLASPTGYGSQADGVANRVVPLDGVICKCCCHKIVLDALLVDYVRVLITLRRKDRADNAACQALDQIIGSSYKISIPNPARSVHKLLSGEESLAEFPF GSFLHSVETAKDSAPFLSLLAPLDTGLQNSYWKAPPSANSVELIIALGTLSDVSGVVLLVSPCGYSAADAPSVQVWASNKLENEERSCVGKWDIQSMATS SSELYGPERVEASGEVARHVKFSFKNVVRCRIIWITLRLPRAGSSSVNIPKDFNLLSLDENPFAEVDRRASFGGGPDTLPCLHARRILVLGKSVKKEAQS TDTVNLNGWLDRPPQLNRFKIQIEVERLIDSDLTLEQCLPPSSPFLGGFRLDAFSAIKPRVIHSPSSDLDMCDTSATFLEGRHISPAVLHIQVTAIQEPN KLVTIGEYRLPEAKAGTAMYFDFPRQMQTRRVTFRLLGDIGAFTDDPAESDDSGTRNLPVAAGLSLANRIKLYHYGDPYELGKWASLSAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10043474 [exp]	0	1
AT5G65950			unknown protein		Lus10037422 [exp]	1.7	0.9558
AT3G60860			SEC7-like guanine nucleotide e...		Lus10009300 [exp]	2.0	0.9595
AT1G60070			Adaptor protein complex AP-1, ...		Lus10029177 [exp]	2.0	0.9569
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Lus10038353 [exp]	3.7	0.9522
AT3G08530			Clathrin, heavy chain (.1)		Lus10007499 [exp]	3.9	0.9536
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021680 [exp]	4.5	0.9545
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Lus10036217 [exp]	6.0	0.9450
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10018744 [exp]	6.4	0.9111
AT1G35220			unknown protein		Lus10010355 [exp]	6.5	0.9529
AT4G21700			Protein of unknown function (D...		Lus10006025 [exp]	6.9	0.9294

Compare expression of checked genes

Lus10043474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.