Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23050 42 / 4e-05 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034112 [exp] 86 / 6e-22 AT1G70985 58 / 3e-11 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043476 pacid=23168075 polypeptide=Lus10043476 locus=Lus10043476.g ID=Lus10043476.BGIv1.0 annot-version=v1.0 ATGCCCACCGCTTCCTTAATCGCCGCTGCCGCCACGTCACTTCTCCTCCTCTGCCTACTACCTGCCTTCACCATAGCCGACGACACATGCCCTTACCCAT GTTACCCTCCTCCAACCGCCCCCGGATCCCCTGCCTCCGTCACCAGCAACCCACCTCCGTCTTCTCAATCCTCATCGTATCCTCCGCCTCCGGCCGGCTA CTACCCTTCGCCGGCGGGTAATTACTATATCCCGCCGCCGCCTTCAGGAAACAATAACAACTATGGCTACAACAATCCACCACCCAACGCTATCCTTCCC TACTTCCCTTACTACTACAGAAAGCCTCCCCAAAATCCTGACGGTTCTGGGTCAACGCCGCCGCTGCTGGTCGGAGTCTGGTGGGCGACGACGGTGGTGG CGTCCGGGGTTATCTTGTTGGGGCTTTTCTAG
AA sequence Show only first row Show all	>Lus10043476 pacid=23168075 polypeptide=Lus10043476 locus=Lus10043476.g ID=Lus10043476.BGIv1.0 annot-version=v1.0 MPTASLIAAAATSLLLLCLLPAFTIADDTCPYPCYPPPTAPGSPASVTSNPPPSSQSSSYPPPPAGYYPSPAGNYYIPPPPSGNNNNYGYNNPPPNAILP YFPYYYRKPPQNPDGSGSTPPLLVGVWWATTVVASGVILLGLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23050			hydroxyproline-rich glycoprote...		Lus10043476 [exp]	0	1
AT1G07710			Ankyrin repeat family protein ...		Lus10003748 [exp]	6.7	0.8003
AT4G18400			unknown protein		Lus10023291 [exp]	7.1	0.7222
AT5G10530			Concanavalin A-like lectin pro...		Lus10029554 [exp]	11.4	0.7677
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	16.7	0.7913
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10005088 [exp]	18.1	0.7701
AT1G49420			Heavy metal transport/detoxifi...		Lus10038786 [exp]	22.0	0.7426
AT5G58375			Methyltransferase-related prot...		Lus10042227 [exp]	28.4	0.7643
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10038866 [exp]	29.1	0.7365
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10026751 [exp]	31.6	0.7526
AT2G20230			Tetraspanin family protein (.1...		Lus10022841 [exp]	31.9	0.7434

Compare expression of checked genes

Lus10043476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.