Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06220 773 / 0 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT5G25230 718 / 0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT1G56070 208 / 9e-59 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 194 / 6e-54 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT3G22980 149 / 5e-38 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT5G39900 76 / 2e-14 Small GTP-binding protein (.1) AT5G08650 71 / 7e-13 Small GTP-binding protein (.1) AT2G31060 68 / 8e-12 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT5G13650 68 / 8e-12 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT4G11160 51 / 2e-06 Translation initiation factor 2, small GTP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034111 [exp] 919 / 0 AT1G06220 1761 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031129 [exp] 910 / 0 AT1G06220 1751 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031201 [exp] 202 / 1e-56 AT1G56070 1415 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031763 [exp] 194 / 8e-54 AT1G56070 1418 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031779 [exp] 179 / 1e-48 AT3G12915 760 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10004749 [exp] 147 / 2e-37 AT3G22980 1376 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031185 [exp] 135 / 8e-36 AT1G56070 504 / 6e-175 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10025233 [exp] 78 / 9e-18 AT1G06220 62 / 7e-13 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10015364 [exp] 71 / 1e-12 AT5G39900 1082 / 0.0 Small GTP-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G114900 [exp] 809 / 0 AT1G06220 1710 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.006G190600 [exp] 807 / 0 AT1G06220 1744 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.007G065600 [exp] 204 / 2e-57 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065700 [exp] 204 / 2e-57 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.005G098100 [exp] 199 / 2e-55 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.009G152500 [exp] 151 / 8e-39 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.006G053000 [exp] 72 / 5e-13 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.001G305300 [exp] 69 / 3e-12 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.013G123700 [exp] 69 / 4e-12 AT2G31060 1084 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Potri.017G079800 [exp] 69 / 5e-12 AT5G39900 999 / 0.0 Small GTP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Lus10043477 pacid=23168036 polypeptide=Lus10043477 locus=Lus10043477.g ID=Lus10043477.BGIv1.0 annot-version=v1.0 ATGGATGATAATCTGTATGATGAGTTTGGGAATTACATTGGTCCGGAAATTGAGTCTGACCACGAGAGTGATGAGGAGGAAGATGAAGACCTTCAAGACA GGCATCATGAAGATGAGGCTGCATCCGATGACGAGGAGGCAGGGAATGCTTCCAATGGTTGGCTGACTGCATCTGGGGATGTAGATATGGACAATCAGAT TGTCCTGGCTGAGGACAAGAAGTACTACCCTACAGCGGAAGAGGTGTATGGTGAAGACGTGGAAACTTTAGTAATGGATGAGGATGAGCTCCCGCTTGAG CAGCCAATCATTAAACCTGTAAGGGACATCAAGATGGAGGTTGGGGTTAAGGACTCCTCAACATTCGTCTCCAGCCAATTTCTTGTCGGTCTAATGTCCA ATCCCTCCCTTATTCGCAATGTTGCCCTTGTTGGACACATTCATCATGGGAAGACACTTTTCATGGATATGCTGGTTGAGCAAACACATCATGTAACCAC GTTTAATACAAAGAGTGAAAAACATATGAGGTACACTGATACCAGAGTTGATGAGCAAGAAAGGAGAATATCCATCAAGGCAGTCCCGATGTCACTAGTT CTTGAAGATATCAATTCGAAATCCTACTTGTGTAACATCATGGACACTCCTGGTCATGCAAATTTTTCAGATGAAATGACTGCTGCCCTCAGGCTTGCTG ATGGTGCTGTGTTGGTTGTAGATGCTGCTGAAGGAGTGATGGTAAATACCGAGAGAGCAATACGCCATGCAATCCAGGAGCGCCTGCCTATTGTAGTTGT CATTAATAAGGTGGATAGACTGATAACAGAACTTAAGTTGCCTCCTAAGGATGCTTACCACAAGATAAGGCACACCATAGAGGTCATCAACAACCATATC TCTGCCGTCTCTTCAACTGCAGGGAATGCCACAATTATAGATCCGGTTGCTGGAAATGTTTGCTTTGCAAGTGCTACTGCCGGATGGTCTTTCACTTTGC AATCATTTGCTAGGCTGTATCTTAAACTCCATGGAATTCCGTTTGACCCTGATAGGTTTGCAGCACGCCTCTGGGGGGATATGTATTATCACCCAGATTC AAGGACCTTCAAGAAGAAACCCCCTGTTGCTGGAGGGGAAAGATCTTTTGTTCAATTTGTACTGGAACCTCTCTACAAAATATATAGCCAAGTGGTTGGA GAACACAAGAAGAGTGTGGAAACTACTCTGGCTGAGCTTGGTGTGACTCTTCCTAATGCTGCTTATAGATTGAATGTAAGGCCCTTGCTGAGGTTGGCTT GCAGCAGAGTTTTTGGTACAGCTTCAGGTTTCACTAATATGTTGGTTCGGCATATACCCTCTGCTAAGGATTCAGCTGTGAGGAAGGTTGATCATATATA CACTGGTCCTAAAGATTCTTTGCTTTATAAAGCAATGACAGAATGTGATCCGTCTGGTCCCTTGATGATCAATGTGACCAAATTGTATCCCAAGCTTTGA
AA sequence Show only first row Show all	>Lus10043477 pacid=23168036 polypeptide=Lus10043477 locus=Lus10043477.g ID=Lus10043477.BGIv1.0 annot-version=v1.0 MDDNLYDEFGNYIGPEIESDHESDEEEDEDLQDRHHEDEAASDDEEAGNASNGWLTASGDVDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDELPLE QPIIKPVRDIKMEVGVKDSSTFVSSQFLVGLMSNPSLIRNVALVGHIHHGKTLFMDMLVEQTHHVTTFNTKSEKHMRYTDTRVDEQERRISIKAVPMSLV LEDINSKSYLCNIMDTPGHANFSDEMTAALRLADGAVLVVDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPKDAYHKIRHTIEVINNHI SAVSSTAGNATIIDPVAGNVCFASATAGWSFTLQSFARLYLKLHGIPFDPDRFAARLWGDMYYHPDSRTFKKKPPVAGGERSFVQFVLEPLYKIYSQVVG EHKKSVETTLAELGVTLPNAAYRLNVRPLLRLACSRVFGTASGFTNMLVRHIPSAKDSAVRKVDHIYTGPKDSLLYKAMTECDPSGPLMINVTKLYPKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043477 [exp]	0	1
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10019778 [exp]	1.4	0.9749
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10023443 [exp]	2.4	0.9664
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10001585 [exp]	2.4	0.9664
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Lus10023991 [exp]	3.2	0.9658
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10030088 [exp]	3.5	0.9639
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10019207 [exp]	3.9	0.9438
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003700 [exp]	4.0	0.9663
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10022944 [exp]	4.6	0.9620
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10023426 [exp]	5.2	0.9573
AT3G06530			ARM repeat superfamily protein...		Lus10039121 [exp]	5.5	0.9562

Compare expression of checked genes

Lus10043477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.