Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06220 726 / 0 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT5G25230 712 / 0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT1G56070 303 / 1e-95 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 296 / 6e-94 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT3G22980 134 / 3e-34 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT2G45030 75 / 2e-14 Translation elongation factor EFG/EF2 protein (.1) AT1G45332 75 / 3e-14 Translation elongation factor EFG/EF2 protein (.1) AT1G62750 64 / 6e-11 ATSCO1, ATSCO1/CPEF-G SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034111 [exp] 766 / 0 AT1G06220 1761 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031129 [exp] 759 / 0 AT1G06220 1751 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031186 [exp] 302 / 4e-99 AT1G56070 902 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031779 [exp] 305 / 8e-97 AT3G12915 760 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031763 [exp] 204 / 3e-59 AT1G56070 1418 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031201 [exp] 203 / 2e-58 AT1G56070 1415 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10004749 [exp] 174 / 5e-48 AT3G22980 1376 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031764 [exp] 76 / 2e-16 AT1G56070 158 / 8e-46 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10018604 [exp] 68 / 3e-12 AT2G45030 1343 / 0.0 Translation elongation factor EFG/EF2 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G114900 [exp] 748 / 0 AT1G06220 1710 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.006G190600 [exp] 737 / 0 AT1G06220 1744 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.005G098100 [exp] 304 / 5e-96 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065600 [exp] 304 / 5e-96 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065700 [exp] 304 / 6e-96 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.009G152500 [exp] 144 / 8e-38 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.001G123600 [exp] 69 / 3e-12 AT1G45332 1337 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.003G109900 [exp] 69 / 3e-12 AT1G45332 1330 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.003G113500 [exp] 66 / 2e-11 AT1G62750 1310 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) Potri.002G176966 [exp] 0 / 1 AT1G56070 119 / 6e-10 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF03764 [flax] [poplar] EFG_IV Elongation factor G, domain IV CL0437 [flax] [poplar] EF-G_C PF00679 [flax] [poplar] EFG_C Elongation factor G C-terminus
Representative CDS sequence Show only first row Show all	>Lus10043478 pacid=23168236 polypeptide=Lus10043478 locus=Lus10043478.g ID=Lus10043478.BGIv1.0 annot-version=v1.0 ATGGTGGAGGGTCTTAGGAAGATCAGCAAAAGCTATCCTCTTGCTATAACTAAAGTTGAAGAGTCTGGAGAGCACACTATTCTTGGTACTGGAGAATTAT ATTTGGATTCAATTATGAAAGACCTCCGGGAACTCTATTCTGAGGTAGAAGTCAAGGTAGCAGATCCTGTGGTGTCATTCTGTGAAACTGTTGTGGAATC ATCTTCAATGAAATGTTTTGCCGAAACGCCCAACAAAAAGAATAAAATAACAATGATAGCTGAGCCCTTGGAGAAAGGACTTGCAGAAGACATTGAAAAT GGAATCGTAAGCACTGATTGGAGCAGGAAAGCTGTCGGTGACTTTTTTAAAACCAAATATGACTGGGATTTGCTTGCCGCTCGGTCAATATGGGCATTTG GTCCCGATAAGCAGGGACCTAACATTTTATTGGACGACACACTTCCTACTGAAGTTGACAAGGGCTTGCTTAGTGCTGTCAAGGATTCTATTGTCCAAGG GTTTCAATGGGGCGCACGAGAAGGACCTCTATGTGACGAGCCAATCAGAAATGTCAAATTTAAAATAGTTGATGCAAGAATTGCACCTGAACCATTGCAC CGGGCGTCAGGCCAGATTATTCCCACGGCAAGGAGGGTAGCATATTCATCCTTCCTTATGGCAACACCTCGGCTGATGGAACCCGTGTATTATGTTGAGA TACAAACACCAGTTGACTGCCTATCTGCTATTTATACTGTTTTGTCTCGTAGACGTGGACACGTGACAGCAGATGTTCCTCAGCCTGGAACTCCAGCTTA TATCGTTAAGGCATTCTTACCAGTGATAGAGTCGTTTGGTTTCGAGACGGACTTGAGATACCACACCCAGGGGCAAGCATTCTGTCTCTCGGTGTTTGAT CACTGGGCTATAGTACCGGGGGATCCTCTCGACAAAAGCATCGTTTTACGGCCACTGGAGCCAGCACCAATCCAGCATCTCGCCCGCGAATTTATGGTAA AGACCAGGCGGCGCAAGGGAATGAGCGAAGATGTGAGCATCAACAAGTTCTTCGACGAGGCTATGATGGTAGAGCTGGCTCAGCAGGCTGCTGACATTCA TCAAATGATGTGA
AA sequence Show only first row Show all	>Lus10043478 pacid=23168236 polypeptide=Lus10043478 locus=Lus10043478.g ID=Lus10043478.BGIv1.0 annot-version=v1.0 MVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLEKGLAEDIEN GIVSTDWSRKAVGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKGLLSAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLH RASGQIIPTARRVAYSSFLMATPRLMEPVYYVEIQTPVDCLSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFD HWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDVSINKFFDEAMMVELAQQAADIHQMM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043478 [exp]	0	1
AT1G13030			sphere organelles protein-rela...		Lus10036876 [exp]	1.0	0.9537
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10033203 [exp]	2.8	0.9340
AT3G15460			Ribosomal RNA processing Brix ...		Lus10027900 [exp]	4.9	0.9271
AT1G64600			methyltransferases;copper ion ...		Lus10017309 [exp]	5.7	0.9007
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10030171 [exp]	6.7	0.9333
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10028659 [exp]	6.9	0.9318
AT3G61700			Plant protein 1589 of unknown ...		Lus10019011 [exp]	7.5	0.9149
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10017896 [exp]	8.9	0.9200
AT1G80530			Major facilitator superfamily ...		Lus10001678 [exp]	10.3	0.8951
AT5G07900			Mitochondrial transcription te...		Lus10036450 [exp]	10.4	0.8944

Compare expression of checked genes

Lus10043478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.