Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63250 748 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT2G07750 738 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT5G08610 583 / 0 PDE340 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63630 576 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08620 562 / 0 ATRH25, STRS2 STRESS RESPONSE SUPPRESSOR 2, RNA HELICASE 25, DEA(D/H)-box RNA helicase family protein (.1) AT3G18600 205 / 6e-58 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G65900 197 / 2e-54 DEA(D/H)-box RNA helicase family protein (.1) AT3G22330 181 / 6e-49 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT5G60990 177 / 9e-49 DEA(D/H)-box RNA helicase family protein (.1) AT3G01540 180 / 2e-48 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034110 [exp] 712 / 0 AT2G07750 330 / 7e-106 DEA(D/H)-box RNA helicase family protein (.1) Lus10030265 [exp] 572 / 0 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10004017 [exp] 558 / 0 AT5G63630 797 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012633 [exp] 542 / 0 AT5G08610 719 / 0.0 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10034109 [exp] 522 / 0 AT1G63250 444 / 5e-152 DEA(D/H)-box RNA helicase family protein (.1) Lus10010127 [exp] 486 / 5e-166 AT5G08610 639 / 0.0 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009616 [exp] 205 / 1e-57 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027240 [exp] 202 / 1e-56 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031761 [exp] 196 / 2e-55 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124100 [exp] 836 / 0 AT1G63250 883 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G107300 [exp] 810 / 0 AT1G63250 841 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.002G169800 [exp] 573 / 0 AT5G63630 810 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G097700 [exp] 567 / 0 AT5G63630 768 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G250700 [exp] 207 / 1e-58 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G045300 [exp] 207 / 2e-58 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G068800 [exp] 191 / 1e-53 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G013900 [exp] 188 / 6e-53 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 186 / 3e-52 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G423300 [exp] 183 / 6e-49 AT5G54910 858 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10043479 pacid=23168446 polypeptide=Lus10043479 locus=Lus10043479.g ID=Lus10043479.BGIv1.0 annot-version=v1.0 ATGGAGTTCGCTAGAGTTAGAATGTCCGGCCTCCTTCGTGCTCGCCTTGTTCGTGGTGGATGTCAAAGATTTCGTGTCATGCGAAGAGCTGCAGATTTGT CGATTGAGGATGGCGAGCCTTTGCAGGCAACTGAGGCAAGGTCGCGCATGATAAACGAACGTTCGAATCTTAAACAAGGTCTATTGGTTTCACTCGTTGG CTCCAGGAGGGACTTCTCTACACTGAGAAGTTCAGGGGTTCCGAGTCCAAGTAATCTGGGCAAGCCGTCTGCTCAGAGACGACTAAGATACAAAAGAAAT GACAGTTCTTCAAGTGACGAAGATGAGTATTGGGAGTCTGGTTCAGAGGTTGGGGTGTCTGTGGGTGGAAAGAGACGTGCAAAAGAGATAGGCAGCTTGG CTGCTTTAGCAAATTATGATGTCAAGATCAGGAAGCGAGTTCCGTTGAAGAAGGTTATGGAGGCGCTTGAATTTCCGAACGATGTGGAGTTGATTAGGCA CGAGATTGGTCAGAACAAGTTGGTTGAGGATGAAGAGAAGAGTTATAGAGGCAATGAAGAGTCCTTTCTTAGTCAAAAAAGATTCGATGAGTGTGGTATA TCTCCCTTGACAGCCAAGGCAATGACAGCAGCTGGCTATGTTCAAATGACCAGGGTGCAGGAAGCTACCTTATCTGTTTACCGTGATGGCAAAGATGCTA TGATTAAGGCCAAAACTGGCACTGGAAAGACTGCGGCTTATTTGCTTCCTGCAATTGAAGCAGTTCTGAAAGCAGCAAGTGGCGGAGTAAATCAAAGGGT GAGTCTAATACATGTGCTCATACTCTGTCCTACTCGGGAGCTAGCAAGTCAGATAACTGCGGAAGCAAATGCTTTGTTGAGGTTCCATGATGGAATTGGT GTCCAGTCGCTGGTTGGAGGTACTCGTTTCAAGGATGATCAGAGACGTCTGGAGTTAGATCCATGTCAGATAATCGTTGCAACTCCTGGTAGGCTGTTGG ATCATATCGAGAATAAAGGTGGTTTGTCTGTGCATTTGATGCGTTTGAAGATGCTGATACTTGATGAAGCAGATCATTTGCTAGACCTTGGATTCCGAAA AGATGTGGAGAAAATTGCAGATTGTTTGCCGCGTCAGAGGCAATCCTTAATGTTCTCCGCAACTATTCCAAAGGAGGTCCGCCGAATTTCTCAGCTTGTA TTGAACAGAGACCACGATTTCATTGATACAGTTGGTCTGGGTAGTGTAGAAACTCCTGTTAAGGTTAGGCAGACTTTCCTTGTGGTTTCACATGAGCTCC ATTTCCTAACTGTATATCATCTCTTGAAAGAACATATAATGGCAATACCTGATTACAAGGTCATTGTTTTCTGTACAACCGGGATGGTGACATCCCTGAT GTACCAAATTCTTCGCGAGATGAAATTGAACGTGAGGGAGATACATTCTAGAAAGCCTCAACTATATCGTACTCGTGTCTCTAATGAATTCAAAGAATCA AAGCGGTTGATTCTCGTAACATCTGAAGTATCAGCTCGGGGAATGAATTATCCTGATGTCACTTTAGTCATTCAGATGGGTATTCCTTCCGACCGAGAAC AGTACATTCATCGTCTTGGAAGAACGGGAAGGGAAGGCAAAGATGGGGAGGGGATCTTATTGGTGGCTCCATGGGAAGAATATTTCATCGAGGAATTGAA GGAGTTGCCTCTGGAGAAAGTTCCCTCGCCTGCTATAGACCCAGAAGCTAAACTCAAGATGGAGAGTTCGATAGCGAAAGTCGATACGAGCATCAAAGAT GCAGCTTATCATGCATGGCTGGGATATTACAACTCGATCAGGGAAATCGGGAGGGACAAAACCACCCTTGTTGAGCTGGCGAATAGGTTCTGCGAATCGA TCGGTCTAAGCAAACCTCCGTCTATCTTCAGGAGAACGGCACTGAAAATGGGATTGAAAGATATCCCTGGAATCCGAATTCGCCAGTGA
AA sequence Show only first row Show all	>Lus10043479 pacid=23168446 polypeptide=Lus10043479 locus=Lus10043479.g ID=Lus10043479.BGIv1.0 annot-version=v1.0 MEFARVRMSGLLRARLVRGGCQRFRVMRRAADLSIEDGEPLQATEARSRMINERSNLKQGLLVSLVGSRRDFSTLRSSGVPSPSNLGKPSAQRRLRYKRN DSSSSDEDEYWESGSEVGVSVGGKRRAKEIGSLAALANYDVKIRKRVPLKKVMEALEFPNDVELIRHEIGQNKLVEDEEKSYRGNEESFLSQKRFDECGI SPLTAKAMTAAGYVQMTRVQEATLSVYRDGKDAMIKAKTGTGKTAAYLLPAIEAVLKAASGGVNQRVSLIHVLILCPTRELASQITAEANALLRFHDGIG VQSLVGGTRFKDDQRRLELDPCQIIVATPGRLLDHIENKGGLSVHLMRLKMLILDEADHLLDLGFRKDVEKIADCLPRQRQSLMFSATIPKEVRRISQLV LNRDHDFIDTVGLGSVETPVKVRQTFLVVSHELHFLTVYHLLKEHIMAIPDYKVIVFCTTGMVTSLMYQILREMKLNVREIHSRKPQLYRTRVSNEFKES KRLILVTSEVSARGMNYPDVTLVIQMGIPSDREQYIHRLGRTGREGKDGEGILLVAPWEEYFIEELKELPLEKVPSPAIDPEAKLKMESSIAKVDTSIKD AAYHAWLGYYNSIREIGRDKTTLVELANRFCESIGLSKPPSIFRRTALKMGLKDIPGIRIRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10043479 [exp]	0	1
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	7.3	0.8265
AT2G44040			Dihydrodipicolinate reductase,...		Lus10041701 [exp]	7.5	0.8361
AT3G56990		EDA7	embryo sac development arrest ...		Lus10019107 [exp]	12.3	0.8156
AT5G11240			transducin family protein / WD...		Lus10020907 [exp]	14.4	0.8283
AT3G16810		APUM24	pumilio 24 (.1)		Lus10037712 [exp]	15.3	0.8142
AT1G06590			unknown protein		Lus10043409 [exp]	19.4	0.8102
AT3G16810		APUM24	pumilio 24 (.1)		Lus10016836 [exp]	21.9	0.7915
AT4G18820			AAA-type ATPase family protein...		Lus10007316 [exp]	25.4	0.7736
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10011504 [exp]	25.5	0.8031
AT1G60080			3'-5'-exoribonuclease family p...		Lus10034605 [exp]	26.0	0.7653

Compare expression of checked genes

Lus10043479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.