Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01210 810 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 723 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 540 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 428 / 1e-140 Leucine-rich repeat protein kinase family protein (.1) AT4G37250 328 / 5e-102 Leucine-rich repeat protein kinase family protein (.1) AT4G34220 300 / 1e-91 Leucine-rich repeat protein kinase family protein (.1) AT2G42290 291 / 6e-89 Leucine-rich repeat protein kinase family protein (.1) AT3G57830 280 / 1e-84 Leucine-rich repeat protein kinase family protein (.1) AT3G56100 257 / 1e-75 IMK3, MRLK meristematic receptor-like kinase (.1) AT4G20140 212 / 9e-58 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034108 [exp] 1150 / 0 AT2G01210 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033569 [exp] 572 / 0 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017611 [exp] 571 / 0 AT1G66830 672 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015799 [exp] 395 / 6e-128 AT1G67510 959 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037006 [exp] 380 / 1e-122 AT1G67510 915 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019315 [exp] 282 / 8e-85 AT4G37250 728 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011509 [exp] 275 / 2e-82 AT4G37250 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021022 [exp] 252 / 2e-74 AT3G57830 639 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029005 [exp] 220 / 6e-62 AT5G58300 612 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G124300 [exp] 909 / 0 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 902 / 0 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G095700 [exp] 614 / 0 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G119000 [exp] 599 / 0 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G058200 [exp] 441 / 8e-145 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 432 / 4e-142 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G048800 [exp] 345 / 3e-108 AT2G23300 706 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G142300 [exp] 336 / 8e-105 AT4G37250 733 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G300700 [exp] 305 / 6e-93 AT4G34220 620 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G057500 [exp] 276 / 2e-83 AT3G57830 707 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10043480 pacid=23168388 polypeptide=Lus10043480 locus=Lus10043480.g ID=Lus10043480.BGIv1.0 annot-version=v1.0 ATGTCCGCTTTCATTTTGCTGGTTCTTCTTCTCCTTCTCTGCAATTCCCATTGTTCTTCTTCACTGAACGACGAAGGAAATGCGCTTTTAGCCTTCAAGC AGTCCATATCTCAAGACCCAGAAGGGTCTCTAAGCAACTGGGACGCCTCTCAGGAAGATCCTTGCTCTTGGAATGGGGTTACTTGCAAAGACCTCAAAGT TGTCTCTTTAAGCATCCCAAAGAAGAAGCTTTACGGCTTTCTCGCTCCAGCCGCCTTAGGGTCTCTACCTGACCTCAGACATGTCAATTTAAGGAACAAC AACTTGTTCGGTACTTTACCCCCTGCACTTTTCCTTCAAGCTCAAGGGTTACAAAGCTTGGTCCTTTATGGGAATTCCTTCTCTGGATCTCTTCCAGACG AGATTGGTAGGCTTAAATACCTCCAGTCACTCGATTTGTCGCAGAATTTCTTTAATGGCTCACTACCAACATCAATTGTGGAGTGCACAAGACTCAAAAC CCTTGAACTTAGCCGCAATAATTTCACTGGTTCGTTGCCTAGTGGGTTTGGGTCCGGTTTGGTTGCTCTTGAAAAGCTTGACCTTTCGTTGAACAAATTT GATGGCTTGATTCCAAGTGATATGGGGAACTTGTCTAGCTTGCAAGGAACTGTGGACTTGTCACATAATTTCTTCAGTGGTTCTATCCCAGCTAGCCTTG GTAGTCTGCCTGAGAAGGTTTACATTGACTTGACTTATAACAACTTGAGTGGCCCTATCCCTCAAAATGGTGCTCTAATGAACAGAGGGCCAACTGCATT CATTGGGAATCCTGGCCTCTGTGGGCCTCCTTTGAAAACCCCTTGTTCCCCCTCGGATGCTGCTTCAATTGCTGGTGGTTCACCTTCATCATCGATCCCG TATTTACCTGGGCACGGCGCTCCTCGAGATGGAAGCAATGGGAAAAGAGGTGGCTTGAGTAAGAGTGCTGTGATTGCTATAATTGTGAGTGATGTGGTGG GGATTTGCCTTGTTGGGTTGGTGTTTTCGTATTGTTACTCGAGAGTTTGTCATTGTCGTCGAGATAAGGATGGTTTCGAGAAGAGATGCAAAGTCAAGAA GCACTGTCTGTGCTTTCGACGGAAGGATGAATCTGAGACTCCATCTGAGAATGTCGAACAGTACGATCTCGTGGCGCTGGATGGACAGGTGGCATTCGAC TTGGACGAGCTCCTCAAAGCGTCGGCTTTTGTCTTGGGGAAGAGTGGGATTGGGATTGTGTACAAAGTGGTACTTGAAGATGGGCTTACTTTGGCAGTGA GGAGACTTGGGGAAGGTGGCTCTCAGAGGTTTAAGGAATTCCAGACAGAAGTAGAAGCGATTGGGAAGCCCGGTATGGTGTCGTTCACTCCGTTACCATG GCGAGTTCGGTTGAGTATCATGCAAGGAATTGCAAAAGGCTTAGTCTATCTCCATGAGTTCAGTCCCAAAAAGTATGTCCATGGAGACCTCAAACCCAAC AATGTACTTCTAGGACAGAACATGGACCCCCAGATTTCCGACTTTGGTCTTGGCCGGCTTGCCAATATCGCCGGAGGAGGATCACCCCCAACGTCGAATT CCACTCGAATTCCAGTCGAGAGGCCACAAGATAAGCCGAAGAGCGCACCCAGCAGCTTAGATGTTGCAACAGTTTCGTCAAATGCAACGATGGGAACGTA TTACCAGGCTCCAGAAGCCATGAAAGTTGTGAAACCGTCACAGAAATGGGATGTGTACTCATATGGGGTGATCCTACTCGAAATGCTGACGGGAAGATCG CCACTTGTTCACGTGGGTACCTCGGACATGGATGTCGTTCACTGGATTCAGCTGTGCATCGAAGAGGAGAAGCCGCTGGTGGATGTTTTGGATCCCTTTT TGGCTCCCGATCTGGAGAAGGAAGAGGAAGAGATCATCGTTGTGCTTAAGGTCGCGATTGCGTGTGTTAATGCGAGCCCTGAAAGGAGACCTGCAATGAG GAATGTCTTGGATGCTTTGAACAGATTGGTCTGA
AA sequence Show only first row Show all	>Lus10043480 pacid=23168388 polypeptide=Lus10043480 locus=Lus10043480.g ID=Lus10043480.BGIv1.0 annot-version=v1.0 MSAFILLVLLLLLCNSHCSSSLNDEGNALLAFKQSISQDPEGSLSNWDASQEDPCSWNGVTCKDLKVVSLSIPKKKLYGFLAPAALGSLPDLRHVNLRNN NLFGTLPPALFLQAQGLQSLVLYGNSFSGSLPDEIGRLKYLQSLDLSQNFFNGSLPTSIVECTRLKTLELSRNNFTGSLPSGFGSGLVALEKLDLSLNKF DGLIPSDMGNLSSLQGTVDLSHNFFSGSIPASLGSLPEKVYIDLTYNNLSGPIPQNGALMNRGPTAFIGNPGLCGPPLKTPCSPSDAASIAGGSPSSSIP YLPGHGAPRDGSNGKRGGLSKSAVIAIIVSDVVGICLVGLVFSYCYSRVCHCRRDKDGFEKRCKVKKHCLCFRRKDESETPSENVEQYDLVALDGQVAFD LDELLKASAFVLGKSGIGIVYKVVLEDGLTLAVRRLGEGGSQRFKEFQTEVEAIGKPGMVSFTPLPWRVRLSIMQGIAKGLVYLHEFSPKKYVHGDLKPN NVLLGQNMDPQISDFGLGRLANIAGGGSPPTSNSTRIPVERPQDKPKSAPSSLDVATVSSNATMGTYYQAPEAMKVVKPSQKWDVYSYGVILLEMLTGRS PLVHVGTSDMDVVHWIQLCIEEEKPLVDVLDPFLAPDLEKEEEEIIVVLKVAIACVNASPERRPAMRNVLDALNRLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01210			Leucine-rich repeat protein ki...		Lus10043480 [exp]	0	1
AT1G43770			RING/FYVE/PHD zinc finger supe...		Lus10028603 [exp]	2.0	0.8887
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009402 [exp]	2.4	0.9034
AT1G09320			agenet domain-containing prote...		Lus10010903 [exp]	4.1	0.8537
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Lus10037136 [exp]	4.2	0.8714
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10032537 [exp]	4.9	0.8939
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Lus10036795 [exp]	5.7	0.8723
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Lus10038534 [exp]	7.1	0.8907
					Lus10039387 [exp]	8.1	0.8798
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10013418 [exp]	9.4	0.8268
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Lus10036794 [exp]	11.2	0.8522

Compare expression of checked genes

Lus10043480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.