Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15060 658 / 0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) AT1G73750 297 / 3e-94 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034107 [exp] 942 / 0 AT1G15060 774 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10000099 [exp] 433 / 1e-149 AT1G15060 331 / 6e-111 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10013496 [exp] 251 / 2e-75 AT1G15060 423 / 2e-142 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10007966 [exp] 108 / 3e-25 AT1G73750 224 / 9e-69 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G119700 [exp] 713 / 0 AT1G15060 751 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Potri.008G124400 [exp] 701 / 0 AT1G15060 743 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Potri.012G053700 [exp] 505 / 2e-174 AT1G15060 505 / 4e-175 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10043481 pacid=23168173 polypeptide=Lus10043481 locus=Lus10043481.g ID=Lus10043481.BGIv1.0 annot-version=v1.0 ATGGCTACGAAATCGACCTTCCATTCCGACATACGCGCCGCTCTAGCTGTCGCCAATTCCCTGTTCGTCAATCCCGATCACCATCATCCTCGTCGTCTCT CCTCTCCCCGCCGTTTGTCTTTTTCTCATCAACAGCTCCCTCCTCCTTACGTCGCCGCTTATTCACGGCCGCCTTCGTCATCCTCTTCCTCGTCGCTGTT CGGGATTAGAGCTTTCTCCACCGGAACCCCTGAACCAGCTGTCAAACTTCCTCAGAAGCCCCCGATTTGCAGCGCTGATGAGCTTCACTACGTCCCTGTC CCCAATTCCGATTGGCGTCTTGCTCTCTGGCGCTATCACCCTTCTCCTCAGGCTCCTCCAAGGAATCATCCACTGTTACTGTTGTCTGGAGTTGGGACTA ATGCCATTGGTTATGACCTTTCTCCTGGGTCATCATTTGCAAGATACATGTCTGGCCAAGGCTTTGACACATGGATTCTTGAAGTTCGAGGGGCCGGACT AAGTGTGTGGGAATCAGATTCTAAAAAAGTTGGGCAGTCTGCTTATGCAGCTGCTGAGCAGATGGAATCAGCTGCTAAGATTGCAACTAATGGAGCTGCG TCTGCAAATCAGGAAACTGCAAGTTCTCAAAACATGTCTGCGAAAACTGAGGTTTCATCGGTCCCAGAGGATCCAACTGGACTAGCAACTGTGTGGGATG AATCGAAGTTGGTGTCAAACTTGACAGATACATTCATGCGTTTGTCAGAAAGTCTCTCTGGTTTTCTTGGTGAAGGTCAATCCATGATTATGTCTGCGAA ATTATTCGACCAGATATCTACACTTCTAGAAGATACCCAGTTATCTGAGCGTCTTAATGAGTTAAGGGAGAAGCTTCTGAGCTTGCTGGAGATGAGGCAA ACTTCTGGTGTTACCGGTCAGATCAGAGATCTAAGTCAAAAGCTTGTAAATATTGTTGAGGAGGGGCAACGGTCTGTCTCCCCCCAGTTGTTTGATTTGC AGGAGCGTCTTGCATCAACTATAGAAGATTTTCAGAAACAACTTGACTTGATTGTAAAGTATGACTGGGACTTCGACCATTACCTCGAGGAGGATGTTCC TACTGCGATGCAATATATAAAAGCACAATGCAAACCAAAGGATGGAAAGTTGCTTGCCATTGGACATTCCATGGGAGGCATCTTACTGTATGCAAGATTA TCACGTTGTGGAGGAGACTCTGGTTTTGCTGCCATTGTTACTCTGGCTTCGTCAATTGACTACACTTCTTCAAGTTCAAGGCTCAAATTACTTCTACCTC TGGCTGATCCTGCTCAGGCTCTGAACGTACCTGTCGTTCCTTTGGGAGCATTGTTGGCAGCAGCATATCCTCTTTCATCTCGTCCTCCATATGTGTTATC TTGGCTCAATCACTTCATATCATCACAGGATATGATGCGCCCAGAGCTGCTAGAAAAGCTTGTTTTGAATAACTTTTTCATCTTGTACTCCTCAGTTGTA TTGCCGATGAACAATATTGACGTGATTGGCCAAACAGGTACCATACCAGCAAAACTTCTATTGCAGCTTACAACAGCCTTCCGAGAGGGTGGATTGCGCG ATAGGAGTGGCAAAATTCTGTACAAGGACAATTTACATAATTGCGATATTCCAGTCTTAGCTTTAGCTGGCGATGAAGATATAATTTGCCCGCCAGAGGC TGTCGAAGAAACTGTCAAGGTTCTCCCCAAACATTTGGTCACCTACAAACTTTTAGGAGGACCAGGAGGTCCGCACTATGCGCATTACGATTTGGTAGGA GGACACATGGCAGTGGAGCAAGTTTATCCTGCAATAGTCGAATTTCTTAGCCAGCATGACTCGGTGTGA
AA sequence Show only first row Show all	>Lus10043481 pacid=23168173 polypeptide=Lus10043481 locus=Lus10043481.g ID=Lus10043481.BGIv1.0 annot-version=v1.0 MATKSTFHSDIRAALAVANSLFVNPDHHHPRRLSSPRRLSFSHQQLPPPYVAAYSRPPSSSSSSSLFGIRAFSTGTPEPAVKLPQKPPICSADELHYVPV PNSDWRLALWRYHPSPQAPPRNHPLLLLSGVGTNAIGYDLSPGSSFARYMSGQGFDTWILEVRGAGLSVWESDSKKVGQSAYAAAEQMESAAKIATNGAA SANQETASSQNMSAKTEVSSVPEDPTGLATVWDESKLVSNLTDTFMRLSESLSGFLGEGQSMIMSAKLFDQISTLLEDTQLSERLNELREKLLSLLEMRQ TSGVTGQIRDLSQKLVNIVEEGQRSVSPQLFDLQERLASTIEDFQKQLDLIVKYDWDFDHYLEEDVPTAMQYIKAQCKPKDGKLLAIGHSMGGILLYARL SRCGGDSGFAAIVTLASSIDYTSSSSRLKLLLPLADPAQALNVPVVPLGALLAAAYPLSSRPPYVLSWLNHFISSQDMMRPELLEKLVLNNFFILYSSVV LPMNNIDVIGQTGTIPAKLLLQLTTAFREGGLRDRSGKILYKDNLHNCDIPVLALAGDEDIICPPEAVEETVKVLPKHLVTYKLLGGPGGPHYAHYDLVG GHMAVEQVYPAIVEFLSQHDSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15060			Uncharacterised conserved prot...		Lus10043481 [exp]	0	1
AT1G29760			Putative adipose-regulatory pr...		Lus10007323 [exp]	2.8	0.8159
AT3G59350			Protein kinase superfamily pro...		Lus10025498 [exp]	3.2	0.8487
AT4G40010		SNRK2-7, SNRK2....	SUCROSE NONFERMENTING 1-RELATE...		Lus10015676 [exp]	4.0	0.8103
AT3G59350			Protein kinase superfamily pro...		Lus10026708 [exp]	4.2	0.8131
AT5G53340			Galactosyltransferase family p...		Lus10038830 [exp]	5.5	0.7938
AT5G04460			RING/U-box superfamily protein...		Lus10038656 [exp]	7.3	0.7893
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10009891 [exp]	7.9	0.7913
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10014814 [exp]	8.7	0.7316
AT5G32440			Ubiquitin system component Cue...		Lus10039988 [exp]	12.2	0.8039
AT5G53310			myosin heavy chain-related (.1...		Lus10039322 [exp]	18.7	0.7491

Compare expression of checked genes

Lus10043481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.