Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76900 543 / 0 TUB AtTLP1 tubby like protein 1 (.1.2) AT1G25280 535 / 0 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT1G43640 521 / 0 TUB AtTLP5 tubby like protein 5 (.1) AT2G47900 438 / 2e-152 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT2G18280 381 / 3e-130 TUB AtTLP2 tubby like protein 2 (.1.2) AT1G47270 372 / 3e-126 TUB AtTLP6 tubby like protein 6 (.1.2) AT5G18680 357 / 9e-121 TUB AtTLP11 tubby like protein 11 (.1) AT3G06380 216 / 4e-66 TUB ATTLP9 tubby-like protein 9 (.1) AT1G53320 213 / 4e-65 TUB AtTLP7 tubby like protein 7 (.1) AT1G16070 63 / 1e-10 TUB AtTLP8 tubby like protein 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034106 [exp] 750 / 0 AT1G25280 585 / 0.0 tubby like protein 10 (.1.2.3) Lus10028579 [exp] 640 / 0 AT1G25280 597 / 0.0 tubby like protein 10 (.1.2.3) Lus10018884 [exp] 635 / 0 AT1G76900 596 / 0.0 tubby like protein 1 (.1.2) Lus10029780 [exp] 632 / 0 AT1G76900 615 / 0.0 tubby like protein 1 (.1.2) Lus10042807 [exp] 484 / 2e-160 AT3G53760 1013 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Lus10033977 [exp] 391 / 5e-134 AT2G47900 548 / 0.0 tubby like protein 3 (.1.2.3) Lus10012803 [exp] 380 / 3e-130 AT2G47900 523 / 0.0 tubby like protein 3 (.1.2.3) Lus10033209 [exp] 362 / 1e-122 AT1G47270 471 / 1e-165 tubby like protein 6 (.1.2) Lus10033208 [exp] 362 / 1e-122 AT1G47270 476 / 1e-167 tubby like protein 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G192300 [exp] 638 / 0 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.002G068200 [exp] 635 / 0 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.005G192400 [exp] 629 / 0 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.008G195200 [exp] 397 / 2e-136 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.010G031000 [exp] 395 / 9e-136 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.007G023400 [exp] 395 / 2e-135 AT2G18280 519 / 0.0 tubby like protein 2 (.1.2) Potri.005G121600 [exp] 381 / 5e-130 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.005G228500 [exp] 380 / 1e-129 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.002G034600 [exp] 375 / 2e-127 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2) Potri.001G390200 [exp] 322 / 2e-107 AT1G53320 516 / 0.0 tubby like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF01167 [flax] [poplar] Tub Tub family CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10043482 pacid=23168241 polypeptide=Lus10043482 locus=Lus10043482.g ID=Lus10043482.BGIv1.0 annot-version=v1.0 ATGTCGTTCCGTAGTATAGTTCGTGATGTCAGAGACGGGTTTGGGAGCTTATCCCGGCGGGGTTTTGACGTAAGGCTGCCGGTTCATCATAGAGGGAAGT CCCATGGCTCCATTACAGACTCACAGGACCAGCTGGCGGTTATCCAGAGCAGTTGTTGGGCTAGCCTTCCGCCTGAGTTGCTGCGTGATGTAATCAAGAG ATTGGAGGCTAGTGAAGGCACATGGCCTGCTCGCAAACATGTTGTTGCTTGTGCTGCAGTTTGCAAAGCGTGGAGAGAAATGTGTAAAGAAATTATTAGA AGTGCTGAGGTCTCCGGGAAGATTACTTTCCCCATTTCCCTGAAACAGCCTGGTCATCGGGATGGACTCATACAATGCTTCATTAAGAGAGACAAATCCA AGTTAACTTACCATCTTTTCCTTTGCCTTAGCCCTGCTTTGCTTGTTGAAAACGGGAAGTTTCTTCTCTCTGCTAAAAGGACTCGCAGAACTACTTACAC TGAGTGTATTATCTCCATGGACGCTGACAACATATCAAGATCAAGTGGTGCATATATGGGAAAACTGAGATCAAATTTCTTAGGGACCAGATTCATAATC TACGACACACAGCCACCCTACAACAACTCCCATCTCCCCCCACCTGGTCGAAGCCGGAGATTCTACTCCAAGAAAGTTTCGCCAAAGGTCCCAACCGGCA GCTACAACATTGCTCAGATTTCATACGAGCTAAACGTGCTGGGGACAAGGGGTCCCCGAAAAATGCAGTGTACAATGCAATCCATCCCAACCTCATCCCT TCAGCCCGGCGGTTCAGTCCCATCCCAACCAGAGATCCTGCCGAACTGCATCGATGAATCGTTCAGAAGCATGTCCTTGTCTAGATCAATCGGCAGCTCG AGCGAGTTCAGCAGCTCCCGATTCTTCGATGTTGGTAGACGCCTAGAACGAGAAGGAGGCGACGGAGAAGAGGAAGCGAAAGATCGGCCGCTGATTCTCC GAAATAAAGCGCCCAGGTGGCACGAGCAACTGCAATGCTGGTGTCTCAACTTCCGCGGCAGAGTTACAGTAGCCTCTGTCAAAAACTTCCAGCTGATAGC TGCAAATCCACCTACTGCTACTGGTTGCGGACAACCACCCTCTCAGCCGCCGCCAGCTCAGTCGGACCATGATAAGGTGATACTGCAGTTTGGGAAGGTG GGGAAAGATATGTTCACCATGGATTACCGGTACCCTCTGTCTGCATTCCAAGCTTTTGCGATATGCTTGAGCAGTTTTGACACCAAGTTGGCTTGTGAAT AG
AA sequence Show only first row Show all	>Lus10043482 pacid=23168241 polypeptide=Lus10043482 locus=Lus10043482.g ID=Lus10043482.BGIv1.0 annot-version=v1.0 MSFRSIVRDVRDGFGSLSRRGFDVRLPVHHRGKSHGSITDSQDQLAVIQSSCWASLPPELLRDVIKRLEASEGTWPARKHVVACAAVCKAWREMCKEIIR SAEVSGKITFPISLKQPGHRDGLIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTECIISMDADNISRSSGAYMGKLRSNFLGTRFII YDTQPPYNNSHLPPPGRSRRFYSKKVSPKVPTGSYNIAQISYELNVLGTRGPRKMQCTMQSIPTSSLQPGGSVPSQPEILPNCIDESFRSMSLSRSIGSS SEFSSSRFFDVGRRLEREGGDGEEEAKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAANPPTATGCGQPPSQPPPAQSDHDKVILQFGKV GKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10043482 [exp]	0	1
AT5G56610			Phosphotyrosine protein phosph...		Lus10012928 [exp]	6.6	0.7866
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	8.8	0.8004
AT4G39140			RING/U-box superfamily protein...		Lus10041970 [exp]	9.3	0.7567
AT5G56190			Transducin/WD40 repeat-like su...		Lus10021975 [exp]	11.1	0.7353
					Lus10013070 [exp]	13.3	0.7131
AT5G06140		ATSNX1	ARABIDOPSIS THALIANA SORTING N...		Lus10016994 [exp]	14.1	0.7282
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Lus10000829 [exp]	20.3	0.7245
AT5G67190	AP2_ERF	DEAR2	DREB and EAR motif protein 2 (...		Lus10018727 [exp]	21.1	0.7273
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10027672 [exp]	21.4	0.7122
AT2G22120			RING/FYVE/PHD zinc finger supe...		Lus10019687 [exp]	22.6	0.7266

Compare expression of checked genes

Lus10043482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.