Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31860 232 / 1e-76 HISN2, AT-IE HISTIDINE BIOSYNTHESIS 2, histidine biosynthesis bifunctional protein (HISIE) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034105 [exp] 323 / 5e-110 AT1G31860 367 / 1e-125 HISTIDINE BIOSYNTHESIS 2, histidine biosynthesis bifunctional protein (HISIE) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G391400 [exp] 236 / 2e-78 AT1G31860 371 / 3e-130 HISTIDINE BIOSYNTHESIS 2, histidine biosynthesis bifunctional protein (HISIE) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0231 [flax] [poplar] MazG PF01503 [flax] [poplar] PRA-PH Phosphoribosyl-ATP pyrophosphohydrolase CL0231 [flax] [poplar] PF01502 [flax] [poplar] PRA-CH Phosphoribosyl-AMP cyclohydrolase
Representative CDS sequence Show only first row Show all	>Lus10043483 pacid=23168057 polypeptide=Lus10043483 locus=Lus10043483.g ID=Lus10043483.BGIv1.0 annot-version=v1.0 ATGTTGACACAGGAGCTTTGCGAACAGGGCTCTAGCTACCACCATTTCCTCCCGGAAGGCGACGTTTTACAGTCGATCACGTTCATCCTTATGGACAAAA GGAGAGACATCCAACACTTCATCAATATTCATGACATATTTCTTGACTGTGACCGTGACTCTGTTAAGTATTTTGTGTTTGTGCCGATCATTTATCTTGG GAAACCAGTTGGCCCTACCTGTCACACAGGCTCTGAAACCTGCTACTACACTTCTGTGTTCGACTCTTTGGAAACTGAACAGCCTGAAGTAAATAAGTTG GCGTCAACAAGCTTATACTCATTGGAGTCCACAATCTCCCAGCGGAAAGCTGAATTCGCTGTAGCAGAAAGCGGGAAACCTTCTTGGACTAAAAGATTAT TGCTTAGTCATGAGCTGTTGTTCACAAAGATCCAGGAGGAAGCAGATGAACTGTGCCAAACACTAGAGAAGAATGAGGATCAAACACGGGCAGCCTCGGA GATGGGAGATGTGCTGTACCATGCCATGGTACTGCTGGCACTCAAGGATGTTAAAATGGAAGACGTGCTCGAAATACTTCGTCACAGATTTAGCCAATCT GGCATCGAAGAAAAAGGAAGTCGCGCCAAGCACTAG
AA sequence Show only first row Show all	>Lus10043483 pacid=23168057 polypeptide=Lus10043483 locus=Lus10043483.g ID=Lus10043483.BGIv1.0 annot-version=v1.0 MLTQELCEQGSSYHHFLPEGDVLQSITFILMDKRRDIQHFINIHDIFLDCDRDSVKYFVFVPIIYLGKPVGPTCHTGSETCYYTSVFDSLETEQPEVNKL ASTSLYSLESTISQRKAEFAVAESGKPSWTKRLLLSHELLFTKIQEEADELCQTLEKNEDQTRAASEMGDVLYHAMVLLALKDVKMEDVLEILRHRFSQS GIEEKGSRAKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31860		HISN2, AT-IE	HISTIDINE BIOSYNTHESIS 2, hist...		Lus10043483 [exp]	0	1
AT3G45070			P-loop containing nucleoside t...		Lus10003068 [exp]	2.2	0.8847
AT3G42150			unknown protein		Lus10031451 [exp]	2.2	0.8536
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023453 [exp]	2.4	0.8641
					Lus10021453 [exp]	5.7	0.8612
					Lus10015310 [exp]	6.6	0.8545
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10038667 [exp]	7.9	0.7819
AT2G44820			unknown protein		Lus10026825 [exp]	8.4	0.8478
AT2G19130			S-locus lectin protein kinase ...		Lus10018537 [exp]	9.2	0.7954
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031424 [exp]	9.5	0.8502
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10031707 [exp]	10.6	0.8013

Compare expression of checked genes

Lus10043483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.