Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68220 251 / 9e-86 Protein of unknown function (DUF1218) (.1) AT4G27435 132 / 5e-39 Protein of unknown function (DUF1218) (.1) AT1G52910 128 / 1e-37 Protein of unknown function (DUF1218) (.1) AT3G15480 125 / 2e-36 Protein of unknown function (DUF1218) (.1) AT1G13380 124 / 9e-36 Protein of unknown function (DUF1218) (.1) AT1G61065 123 / 2e-35 Protein of unknown function (DUF1218) (.1) AT5G17210 51 / 8e-08 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034105 [exp] 377 / 2e-131 AT1G31860 367 / 1e-125 HISTIDINE BIOSYNTHESIS 2, histidine biosynthesis bifunctional protein (HISIE) (.1) Lus10032662 [exp] 145 / 6e-44 AT3G15480 256 / 3e-88 Protein of unknown function (DUF1218) (.1) Lus10043091 [exp] 145 / 6e-44 AT3G15480 258 / 7e-89 Protein of unknown function (DUF1218) (.1) Lus10034324 [exp] 121 / 1e-34 AT1G13380 275 / 2e-95 Protein of unknown function (DUF1218) (.1) Lus10041447 [exp] 120 / 2e-34 AT1G13380 273 / 1e-94 Protein of unknown function (DUF1218) (.1) Lus10018474 [exp] 114 / 8e-32 AT1G61065 219 / 2e-73 Protein of unknown function (DUF1218) (.1) Lus10032663 [exp] 94 / 4e-24 AT4G27435 103 / 4e-28 Protein of unknown function (DUF1218) (.1) Lus10011208 [exp] 74 / 1e-16 AT1G61065 118 / 3e-34 Protein of unknown function (DUF1218) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G120500 [exp] 292 / 9e-102 AT1G68220 284 / 2e-98 Protein of unknown function (DUF1218) (.1) Potri.008G124100 [exp] 279 / 1e-96 AT1G68220 273 / 3e-94 Protein of unknown function (DUF1218) (.1) Potri.001G403600 [exp] 136 / 2e-40 AT4G27435 218 / 3e-73 Protein of unknown function (DUF1218) (.1) Potri.011G122700 [exp] 131 / 1e-38 AT4G27435 213 / 3e-71 Protein of unknown function (DUF1218) (.1) Potri.010G124800 [exp] 123 / 1e-35 AT1G13380 208 / 6e-69 Protein of unknown function (DUF1218) (.1) Potri.008G120900 [exp] 122 / 4e-35 AT1G13380 200 / 9e-66 Protein of unknown function (DUF1218) (.1) Potri.004G038700 [exp] 82 / 2e-19 AT1G61065 205 / 6e-68 Protein of unknown function (DUF1218) (.1) Potri.001G403500 [exp] 76 / 6e-17 AT3G15480 106 / 3e-29 Protein of unknown function (DUF1218) (.1) Potri.019G048300 [exp] 54 / 6e-09 AT5G17210 188 / 1e-60 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [flax] [poplar] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Lus10043484 pacid=23168013 polypeptide=Lus10043484 locus=Lus10043484.g ID=Lus10043484.BGIv1.0 annot-version=v1.0 ATGGCCGTCTCTATCCCTATTCTAGCTGTCGTCGTCTCTCTTCATCTCATCGCCTTCGTATTCGCCGTCGGCGCTGAACGCCGCCGCAGCACCGCGACGA TTGTGCCAGACAAATACGACGAGTCCACTTTCTGCGTGTACGACACCGACGCTTCCACCGTGTACGGACTTGCCGCGTTTGGGCTGCTGCTGATTAGCCA GACTGTGGTTCACGGCGTCACCAGATGTCTTTGCTTCGGCAAAGGCCTTGTCACTGGAAGCTCCTCTGCTACCTTTGCAATCTTCCTCTTCGTTTTCTCC TGGCTGTGTTTCCTGGGAGCTGAGGCATGCTTATTAGCTGGTTCCGCGAAGAATGCATACCACACCAAGTATCGGGGATCTTTCGGTGTCAAAGACTTGT CTTGCACTACCCTGCGCAAAGGCGTGTTTGCTGCCGGAGCAGCCTTGACGTTGCTGTCGCTACTAGGCTCCGTCTTGTATTACTGGGCTCACTCGAGAGC CGATACTGGTGGGTGGGAGAAGCATAAGAACGAAGGTATTGGCTTGACTCCTTCAGACTACCCGCATCAGCAACAACAACCAGCTGGCGAGTTCGGGAAG ATTTAA
AA sequence Show only first row Show all	>Lus10043484 pacid=23168013 polypeptide=Lus10043484 locus=Lus10043484.g ID=Lus10043484.BGIv1.0 annot-version=v1.0 MAVSIPILAVVVSLHLIAFVFAVGAERRRSTATIVPDKYDESTFCVYDTDASTVYGLAAFGLLLISQTVVHGVTRCLCFGKGLVTGSSSATFAIFLFVFS WLCFLGAEACLLAGSAKNAYHTKYRGSFGVKDLSCTTLRKGVFAAGAALTLLSLLGSVLYYWAHSRADTGGWEKHKNEGIGLTPSDYPHQQQQPAGEFGK I

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68220			Protein of unknown function (D...		Lus10043484 [exp]	0	1
AT4G14615			unknown protein		Lus10041178 [exp]	1.0	0.8728
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10015411 [exp]	2.0	0.8687
AT4G28440			Nucleic acid-binding, OB-fold-...		Lus10013989 [exp]	2.4	0.8683
AT5G62200			Embryo-specific protein 3, (AT...		Lus10031684 [exp]	2.8	0.8517
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10017051 [exp]	3.5	0.8146
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10004772 [exp]	4.0	0.8281
AT4G02485			2-oxoglutarate (2OG) and Fe(II...		Lus10037635 [exp]	4.7	0.7948
AT3G18510			unknown protein		Lus10042971 [exp]	5.0	0.8453
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10035948 [exp]	8.5	0.7879
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10025575 [exp]	11.2	0.8368

Compare expression of checked genes

Lus10043484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.