Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55550 628 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G27950 355 / 8e-111 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G27550 277 / 2e-80 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G22610 280 / 2e-79 Di-glucose binding protein with Kinesin motor domain (.1.2) AT1G72250 273 / 8e-77 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G27000 261 / 3e-73 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT2G47500 245 / 8e-68 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G54670 236 / 4e-66 KATC, ATK3 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) AT4G27180 236 / 4e-66 KATB, ATK2 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B, kinesin 2 (.1) AT3G44730 239 / 2e-65 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G223800 [exp] 1496 / 0 AT1G55550 647 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G033900 [exp] 372 / 4e-117 AT5G27950 676 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G020700 [exp] 275 / 9e-80 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G030271 [exp] 270 / 6e-78 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G110600 [exp] 263 / 1e-73 AT2G22610 1057 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.011G140000 [exp] 261 / 1e-72 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.013G011500 [exp] 257 / 1e-71 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.005G021100 [exp] 257 / 1e-71 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.001G436200 [exp] 253 / 7e-70 AT1G72250 1248 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033849 [exp] 347 / 1e-107 AT5G27950 662 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018999 [exp] 332 / 3e-102 AT5G27950 617 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035954 [exp] 270 / 7e-76 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10004487 [exp] 259 / 1e-73 AT5G27550 881 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025708 [exp] 258 / 7e-72 AT2G22610 1238 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10029914 [exp] 250 / 1e-70 AT5G27550 905 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005582 [exp] 254 / 2e-70 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10013714 [exp] 254 / 4e-70 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10032897 [exp] 242 / 2e-66 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10029865 [exp] 241 / 4e-66 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.001G000800.1 pacid=42792210 polypeptide=Potri.001G000800.1.p locus=Potri.001G000800 ID=Potri.001G000800.1.v4.1 annot-version=v4.1 ATGGATTCGGGAAAATCTATTAGAAGTCTTGCTGTATCCCTTCATTCTCTACTTGGGCTGAAGGCACATCTGACTTCCAACTGGGTTAAATCAGTTTCTG AAATAATAAAAACCCTTCCAACTGAAAAATCAGTTGACATGCAGCCAACCAAGTCTGATACCGATGATGATGGTGATTCAATTTCAAAAATACAAGATGA ACTGACTGTCTTGAATAACCACATAAACCAACTGAACATAAAGAGGAGGCAGATCCTAAATGAGTTCTTCGACTTGAAAGGGAACATCCGTGTATTTTGT CGAATAAGACCTATCGCATTTGGGGAGAATTTAGGTCATTTAAGACCTGTTGTAGCATCGAATTCAAATGAAGTTGTTCTAAAGCTTATGGAGAATAAGA GCAAGAGTTACAATTTTGACAAGGTTTTCCACCCAGGTTCATCCCAAGATGAAGTTTTTACAGAAGTTGAACCCATCATCAAATCAGTCATTGATGGTTA CAATGCCTGCATTTTTGCATATGGGCAAACCGGCACAGGAAAAACTTTCACAATGGAAGGTAGTGCAGATACTACAGGCATAGTGCCACGGGCTATTGAG GCTCTGTTTAAGCAAGCAGTGGATTGTAACCATGCATTTCTCATCAGTTTCAGTATGCTTGAGATTTACATGGGGAATCTAAAGGACTTGCTTGTCCCCA AACCAACAAAAGCTACAGACCCGATGCCACCTTGCCTTTCAATTCAAACAGATCCAAAGGGAGGAATTGAAATCGACAACCTTGTGGCCATTAAAGTGAA CGACTTCAACCAAGCTCTGAGGCTGTACAGATTGGGTTGCCGATTCAGAACAACTGCCTCCACAAATTCCAACCTGACATCTAGCAGATCTCACAGCATG ATACGGGTAGCAATAACTTGCTTCGATGCTGCTGAAAGGCGACGGGAAACAAATAAATTATGGTTAGTTGACCTCGGGGGAAGCGAGCGTGTATTGAAGA CAAAGGCATGGGGCAAAAGACTCGATGAAGGGAAAGCCATTAATTTGTCACTCTCTGCTCTTGGGGATGTGATTAGTGCCCTCCAAAGGAAAAGGCACCA TATACCTTACAGGAATAGCAAGCTGACACAAGTTCTTAAAGATTCCTTAGGTGATGATTCAAAAACAATTATGCTGGTCCATGTCAGTCCCAAAGAAGAA GATTTGTGTGAGACCATATGTTCTTTAAATTTTGCAACAAGGGTGAAAAGCGTTCATCTAGGAAATGAGGATACAATTGAAGCTAAAGAGCAAAAGGGAG TTGCAATGGCAGATCTGCAGCAAGAGATGAAACATATTGAAGATGAACGGCTGCTTGTTAGAAGTGACATTGAGAAAATAAACAAGAAATTAGAAAATCT AACAGGGACAAATCCATCGTCTGAGGAGCAACTGGAGGCATTCCATTCTTTAATCAAAGATCAGCTTACAAAGAGCAGGATAGTAGATATTACAGTGACT CCCTTATCAAAGGTACCAAGATTTATGAGGCCAACCATTTGCAGCAAAAGAAAATCTGGGACGGGGCATCAAACTTCTGAAGGAAGAGATGACACAGTCC TGACAAGAAGGAGAAGACCAACATCTCATCGCGCAGAGTCTGTGAGTTTCCCTGTAAAGGATCATTCAGAATACAATTCAGACCGCAGCATTTCCAGATC TAGCTGTTTGGCTGAGTTGAACATGAAAATTAGTGCTGATAATGCAACAGAATGCAGCCAAGACACATCCGAAACTGATTTTAAATCTAATGGTCTCCAA GAACAAGAAAGAGCACCAGGAAGTTTGATTAGTCAAAAGGTTGGCATCAGTCACATCCAGAAAAATAGCAGTAGACAGGTGAACAAAATTAACCATATCA AATTTTCGAAGGTTGATAATTGGCTGCATCTACAGAAGAGTGAATCCACTCTAAGTAGTTGCAGTCAAAGGACAAAACGGGTTTTAGCTGTTCCAATTCC TGAGAGGAAACATAAGACTAATGTACAGAGCAAAGCAGACGAGAAAGTGCAAGACTATGTGTATACAAAGCAAGAAGTTGTCAACCATGATAAATTAAAT AATCATGCAACTACAGGGGCAGTTGGAAAGCCCATATCAGAAGTGGTCATTGAAAAACCACTGAAGATGTTAAGAGATTTATTTAATGAGGACTCAAGAT CCGATGTTACTACTCCATTACAGACAACTGGAGGGGAAACAACGATACAAGTACAGCATTCTGTGGATGGCTCATTAACAGGGGATAGTGAAAATGACAC CTCTTCTCCACCAGATGAGTGTTCTCCTAGACTTGAAGAATGTGAGGATGGCAACGGGGTCAATGCTATGTCAACTACACAGGCACCAGAAGGAAAAATA CAAAGTTCAGATTGTTTCCTGCTAAAGAACAGTGGGTGCAGTGAATGTTATCCATCTGAGTTATATACTACTTCTGTTTGTTCAAAAAGAGATTCCGGTG TCTCCTTTTCCATGTTAGAACTGGAATCATGCTGTCAGCAAGCACCCACTGAATCAAATATGGAAGACAGTGAAACTCAAGGTTTTTACTCCTTTCAGCC CTCGGAAAAAGAGACAAGACATGGCCTTCTTCAGTTGAAATCTCAGAGAGCTTTATTTACGAACAGCGAAAATCATGAGGACTTAGCTGTGCCCTTTGGT AAACCAGAAGGAAAAGCACAGAACACAGGAATATGCCATGTTGTTAAGCAGAAAATCGAGATTTTATGCTCCAGTGCTCTTCTAGGATTAGGACTTTATA ACCTGGGATTTGACCATGATTTCTTCTATGGTTTAATGCTTTGA
AA sequence Show only first row Show all	>Potri.001G000800.1 pacid=42792210 polypeptide=Potri.001G000800.1.p locus=Potri.001G000800 ID=Potri.001G000800.1.v4.1 annot-version=v4.1 MDSGKSIRSLAVSLHSLLGLKAHLTSNWVKSVSEIIKTLPTEKSVDMQPTKSDTDDDGDSISKIQDELTVLNNHINQLNIKRRQILNEFFDLKGNIRVFC RIRPIAFGENLGHLRPVVASNSNEVVLKLMENKSKSYNFDKVFHPGSSQDEVFTEVEPIIKSVIDGYNACIFAYGQTGTGKTFTMEGSADTTGIVPRAIE ALFKQAVDCNHAFLISFSMLEIYMGNLKDLLVPKPTKATDPMPPCLSIQTDPKGGIEIDNLVAIKVNDFNQALRLYRLGCRFRTTASTNSNLTSSRSHSM IRVAITCFDAAERRRETNKLWLVDLGGSERVLKTKAWGKRLDEGKAINLSLSALGDVISALQRKRHHIPYRNSKLTQVLKDSLGDDSKTIMLVHVSPKEE DLCETICSLNFATRVKSVHLGNEDTIEAKEQKGVAMADLQQEMKHIEDERLLVRSDIEKINKKLENLTGTNPSSEEQLEAFHSLIKDQLTKSRIVDITVT PLSKVPRFMRPTICSKRKSGTGHQTSEGRDDTVLTRRRRPTSHRAESVSFPVKDHSEYNSDRSISRSSCLAELNMKISADNATECSQDTSETDFKSNGLQ EQERAPGSLISQKVGISHIQKNSSRQVNKINHIKFSKVDNWLHLQKSESTLSSCSQRTKRVLAVPIPERKHKTNVQSKADEKVQDYVYTKQEVVNHDKLN NHATTGAVGKPISEVVIEKPLKMLRDLFNEDSRSDVTTPLQTTGGETTIQVQHSVDGSLTGDSENDTSSPPDECSPRLEECEDGNGVNAMSTTQAPEGKI QSSDCFLLKNSGCSECYPSELYTTSVCSKRDSGVSFSMLELESCCQQAPTESNMEDSETQGFYSFQPSEKETRHGLLQLKSQRALFTNSENHEDLAVPFG KPEGKAQNTGICHVVKQKIEILCSSALLGLGLYNLGFDHDFFYGLML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55550			P-loop containing nucleoside t...		Potri.001G000800 [exp]	0	1
AT1G10850			Leucine-rich repeat protein ki...		Potri.008G144900 [exp]	3.87	0.8085
AT1G13130			Cellulase (glycosyl hydrolase ...		Potri.010G049800 [exp]	5.65	0.7232
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155300 [exp]	10.19	0.7374
AT2G28250		NCRK	Protein kinase superfamily pro...		Potri.004G212600 [exp]	14.07	0.7555
AT5G24320			Transducin/WD40 repeat-like su...		Potri.001G086600 [exp]	16.15	0.6938
AT2G14680		MEE13	maternal effect embryo arrest ...		Potri.009G087100 [exp]	20.97	0.7469
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Potri.005G134900 [exp]	22.38	0.7479	LBD36.2
AT4G31880			unknown protein		Potri.001G046500 [exp]	23.36	0.7252
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.008G008700 [exp]	23.49	0.7000
AT4G38040			Exostosin family protein (.1)		Potri.001G072500 [exp]	23.62	0.7336

Compare expression of checked genes

Potri.001G000800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.