Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrEXPA10,EXP2.6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03090 375 / 5e-133 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT5G56320 368 / 4e-130 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT1G69530 367 / 7e-130 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT2G40610 353 / 3e-124 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT1G26770 345 / 2e-121 ATHEXPALPHA1.1, AT-EXP10, ATEXP10, ATEXPA10 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) AT2G39700 323 / 2e-112 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT3G55500 320 / 4e-111 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT5G02260 320 / 4e-111 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT5G05290 317 / 6e-110 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT3G29030 316 / 1e-109 ATEXP5, ATHEXPALPHA1.4, ATEXPA5 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G060800 [exp] 380 / 4e-135 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1) Potri.008G088300 [exp] 375 / 3e-133 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.010G167200 [exp] 363 / 7e-128 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.017G085300 [exp] 355 / 3e-125 AT1G26770 355 / 5e-125 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) Potri.019G057500 [exp] 348 / 2e-122 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.004G123200 [exp] 341 / 1e-119 AT1G69530 334 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.006G108000 [exp] 335 / 3e-117 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.016G135200 [exp] 333 / 3e-116 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.013G154700 [exp] 331 / 1e-115 AT2G40610 348 / 2e-122 expansin A8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036763 [exp] 372 / 7e-132 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10026614 [exp] 371 / 2e-131 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10037164 [exp] 365 / 5e-129 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10008603 [exp] 351 / 2e-123 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10042214 [exp] 349 / 1e-122 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10034227 [exp] 340 / 3e-119 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10033011 [exp] 328 / 4e-114 AT3G29030 389 / 2e-138 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) Lus10029038 [exp] 323 / 2e-112 AT2G40610 418 / 6e-150 expansin A8 (.1) Lus10009917 [exp] 322 / 6e-112 AT2G40610 395 / 9e-141 expansin A8 (.1) Lus10020257 [exp] 322 / 1e-111 AT2G03090 349 / 2e-122 EXPANSIN 15, expansin A15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.001G001100.1 pacid=42791130 polypeptide=Potri.001G001100.1.p locus=Potri.001G001100 ID=Potri.001G001100.1.v4.1 annot-version=v4.1 ATGGAATGCCTTGGATACACCATAGTGATTCTTCTTACAATGTTAAAGATTGTCAAGGGTTATGGCACTGGGTGGACTGGTGCCCATGCAACATTCTATG GAGGAGGTGATGCATCTGGAACAATGGGTGGTGCTTGTGGATATGGGAATCTCTATAGCCAGGGGTATGGGACAAACACAGCTGCACTGAGTACCGCTCT CTTCAACAATGGCTTGAGCTGTGGAGCTTGCTATGAGATTAAGTGTGTAAATGACAATATTTGGTGCTTACGAGGGTCCATTACTGTCACAGCCACTAAT TTTTGCCCACCAAACAATGCTCTTCCTAATAATGACGGAGGGTGGTGTAACCCTCCCCAGCAACACTTTGATCTTTCTCAGCCTGTTTTCCAAAAGATCG CCCAGTATAAAGCTGGAATAGTGCCTGTCCAGTACAGAAGGGTTGCTTGCAGAAAGAGTGGTGGCATCAGATTCACGATTAATGGGCACTCCTACTTTAA TCTGGTGCTGATAACAAATGTGGGAGGAGCTGGTGATGTAGTCGCGGTCTCCATAAAAGGGACTAAAAGCAATTGGCAGGCAATGTCCAGGAACTGGGGC CAGAACTGGCAGAGCAACACCTATCTGAATAATCAAGCCCTCTCTTTCAAGGTCACAACCAGTGATGGACGAACGGTGGTTTCCAACAACGTGGCTCCAT CCAACTGGGCTTTTGGCCAAACCTACACCGGAAGGCAGTTCTAA
AA sequence Show only first row Show all	>Potri.001G001100.1 pacid=42791130 polypeptide=Potri.001G001100.1.p locus=Potri.001G001100 ID=Potri.001G001100.1.v4.1 annot-version=v4.1 MECLGYTIVILLTMLKIVKGYGTGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCVNDNIWCLRGSITVTATN FCPPNNALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDVVAVSIKGTKSNWQAMSRNWG QNWQSNTYLNNQALSFKVTTSDGRTVVSNNVAPSNWAFGQTYTGRQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03090		ATHEXPALPHA1.3,...	EXPANSIN 15, expansin A15 (.1)		Potri.001G001100 [exp]	0	1	PtrEXPA10,EXP2.6
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.014G020600 [exp]	1.73	0.8758
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.016G121800 [exp]	4.58	0.8493
AT1G75450		ATCKX6, ATCKX5,...	CYTOKININ OXIDASE 6, ARABIDOPS...		Potri.002G030500 [exp]	4.89	0.7979	Pt-CKX6.3
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.017G014000 [exp]	5.29	0.8530
AT5G18470			Curculin-like (mannose-binding...		Potri.001G437875 [exp]	9.79	0.8081
AT3G14470			NB-ARC domain-containing disea...		Potri.017G143820 [exp]	12.16	0.8434
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.010G139300 [exp]	16.43	0.8260
AT4G32190			Myosin heavy chain-related pro...		Potri.018G026300 [exp]	16.61	0.7542
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.016G020800 [exp]	17.60	0.8015
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.004G057700 [exp]	18.73	0.8055

Compare expression of checked genes

Potri.001G001100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.