Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55540 233 / 9e-70 EMB1011 Nuclear pore complex protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G223400 [exp] 363 / 4e-115 AT1G55540 449 / 9e-130 Nuclear pore complex protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010334 [exp] 259 / 7e-79 AT1G55540 452 / 2e-130 Nuclear pore complex protein (.1.2) Lus10021859 [exp] 249 / 2e-75 AT1G55540 449 / 2e-129 Nuclear pore complex protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G001201.1 pacid=42790994 polypeptide=Potri.001G001201.1.p locus=Potri.001G001201 ID=Potri.001G001201.1.v4.1 annot-version=v4.1 ATGGCCGAAGAATTGGATATGCTTCTGGAATGCATTGATGAACCAGGTGGTTTCAGGGATGCCTGCACTGTATTTCTGAGAAGCTCAGTTGAAGCTTTGG AGGAGGGCATGGGAACTCTCTCTGAAAATTGCAGAATGTTGAAGAACATGATGGATGAGCGGCTTGGAGAGATCCAACATGTTCTATATAAAACTGTGCA AGTTTTGGCTAGAAGAATACATTTAGATGGTATTGTTAAGCAAGCTTCCGATCGCCAAAGTTGGGAACTCTGGAATCGCCAGAAGTTGAGTTCTGAACTT GAGTTGAAGCGGCGGTGTATACTAAAACTAAATCAGGAGTTGACCAATCAGTTGATTCAAGTGGAGAGACACTTCAATACCCTTGAACTTCGGAGTTTTG GTGGAAATGATGGATCTCACTCAGATCGGATAGCTTTGCAGAGTAGACAAGTGCCTTCAAGTTTGCAGCTGCTGAACAACTTTCTGAAAGTCTCTCAAAA GGAAGTAAAGAAGGAGCTTTTTGAAACAATTGGGATTCCCTATGACGCCTCTTTTAGCTCACCAGATGCAACGGAAGTTAGTGATACCTCATCATTGAAG AAACTTTTACTTTCTCCTGGTTCTACTGCCACCAAAGGTAAGTCTAGGAGACACCGAGCAAGTGCTATGAAGAGTTGTGATTCAGAAACTTCAAGGAGGA GGAGGGACTCACTGGATCAGTTAATTGTTTTTCAAGCCACTTTTATCAATCTTGATGCTCTCCCCTCTAGTGCCCCTCTAGTGTTATTTACTTGCCAACC CAACTAG
AA sequence Show only first row Show all	>Potri.001G001201.1 pacid=42790994 polypeptide=Potri.001G001201.1.p locus=Potri.001G001201 ID=Potri.001G001201.1.v4.1 annot-version=v4.1 MAEELDMLLECIDEPGGFRDACTVFLRSSVEALEEGMGTLSENCRMLKNMMDERLGEIQHVLYKTVQVLARRIHLDGIVKQASDRQSWELWNRQKLSSEL ELKRRCILKLNQELTNQLIQVERHFNTLELRSFGGNDGSHSDRIALQSRQVPSSLQLLNNFLKVSQKEVKKELFETIGIPYDASFSSPDATEVSDTSSLK KLLLSPGSTATKGKSRRHRASAMKSCDSETSRRRRDSLDQLIVFQATFINLDALPSSAPLVLFTCQPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.001G001201 [exp]	0	1
AT4G27330	NZZ	NZZ, SPL	NOZZLE, sporocyteless (SPL) (....		Potri.001G409000 [exp]	5.47	0.5527
					Potri.001G388001 [exp]	8.66	0.6111
					Potri.004G200600 [exp]	10.67	0.5755
					Potri.002G093000 [exp]	19.89	0.5271
AT1G57775			Protein of unknown function (D...		Potri.004G114901 [exp]	36.41	0.4897
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Potri.005G187700 [exp]	59.86	0.5153
AT3G07070			Protein kinase superfamily pro...		Potri.019G051600 [exp]	67.82	0.5192
					Potri.015G020950 [exp]	68.73	0.5049
AT3G26610			Pectin lyase-like superfamily ...		Potri.010G044001 [exp]	70.65	0.4843
AT5G28470			Major facilitator superfamily ...		Potri.016G103200 [exp]	75.76	0.5269

Compare expression of checked genes

Potri.001G001201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.