Plant FIBer expression Database

Potri.001G001250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G55540 47 / 2e-05 EMB1011 Nuclear pore complex protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G223400
[exp]
149 / 2e-40 AT1G55540 449 / 9e-130 Nuclear pore complex protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010334
[exp]
48 / 8e-06 AT1G55540 452 / 2e-130 Nuclear pore complex protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.001G001250.1 pacid=42787668 polypeptide=Potri.001G001250.1.p locus=Potri.001G001250 ID=Potri.001G001250.1.v4.1 annot-version=v4.1
ATGACCCGAGCTAGTTTTGAGCCTACAAACACTACTGTAAAAAGGGTGCTTTTGCAAGAAAGTCAGAAGAAAAGTGTGAATAGGTCATCCTTGTTGAAGG
ATAGTCAACATGTTAGCTCTAGCTTGGTGGACAGATCAGCAGTTCACCAAGAAAACCGGACATTCCCATCATCTTTCTTGCAGCCATCTGAAAGCAAAGG
CTTGCAGTATGGATTCACCAAACAGGCAGTCGAGATAAAACCACCTTCTGCATTTAAATGGGCAACTGGTCCTCTGTTGCCATCACAGCCTCTGGCATTG
AGGTCTCCTACATTGCAAAGTAACAATGCAATGACCTTATCGGTTTCCTCATCGCTAGTATTGCTAGCAGGAGACAAACATACCAGGGAAACTTACAATA
TGAATGCTGATAAATCAAAGACAATTGAAAGTTTGAAGCATGGACCAGCAAACACCAAAGGTTCATTTTTTAAATCTGCTAGTAAAAATCATGAGCCTCC
ATGCTCTTCTGTAGGTGCTACTCCTGTTGCTCCCGCCCTACCTGGAAAAGTTCCTCATATCAATGTTGCAACTAGCACAAGTCAGCCTAGTGAAAAAGCT
TCATCTTCTCCAGCAGTCTCAATATCGCTTTCAGTTTCCTCATCTACAATGATCAATATATCAGCAAACATCCCATCATCAGTATCTACACTGATCTCGT
CAGGCACAATGCCATCAAGCACAGCTTCAACATCCCTGTCATCAGTTTCTTTCTCCCCTGTTTTACCTTCTTCCAGTCCATTATCTTCTCAGGCCCCCAA
GACAGTGTTACCCTCATATACTCCATCTCTAACCTCAGAGACTTCTAAGGAGCTGCAGCCCCCTCTAGGAAAAAACTCCACCTTCTAG
AA sequence
>Potri.001G001250.1 pacid=42787668 polypeptide=Potri.001G001250.1.p locus=Potri.001G001250 ID=Potri.001G001250.1.v4.1 annot-version=v4.1
MTRASFEPTNTTVKRVLLQESQKKSVNRSSLLKDSQHVSSSLVDRSAVHQENRTFPSSFLQPSESKGLQYGFTKQAVEIKPPSAFKWATGPLLPSQPLAL
RSPTLQSNNAMTLSVSSSLVLLAGDKHTRETYNMNADKSKTIESLKHGPANTKGSFFKSASKNHEPPCSSVGATPVAPALPGKVPHINVATSTSQPSEKA
SSSPAVSISLSVSSSTMINISANIPSSVSTLISSGTMPSSTASTSLSSVSFSPVLPSSSPLSSQAPKTVLPSYTPSLTSETSKELQPPLGKNSTF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G55540 EMB1011 Nuclear pore complex protein (... Potri.001G001250
[exp]
0 1
AT1G71840 transducin family protein / WD... Potri.013G116900
[exp]
7.28 0.8739
AT1G66680 AR401 S-adenosyl-L-methionine-depend... Potri.012G068550
[exp]
11.13 0.8620
AT5G19580 glyoxal oxidase-related protei... Potri.018G084200
[exp]
14.49 0.8433
AT2G19260 RING/FYVE/PHD zinc finger supe... Potri.006G075400
[exp]
15.23 0.8461
Potri.012G066225
[exp]
16.97 0.8520
AT1G79430 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPM... Potri.011G023600
[exp]
20.49 0.8163
AT1G13170 ORP1D OSBP(oxysterol binding protein... Potri.008G182766
[exp]
21.00 0.8450
AT5G06740 Concanavalin A-like lectin pro... Potri.018G028800
[exp]
29.93 0.7704
AT3G54070 Ankyrin repeat family protein ... Potri.014G058100
[exp]
30.03 0.8096
AT1G10417 unknown protein Potri.008G190600
[exp]
30.03 0.8410

Potri.001G001250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.