Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56340 323 / 2e-108 ATCRT1 RING/U-box superfamily protein (.1) AT1G55530 281 / 2e-92 RING/U-box superfamily protein (.1) AT4G26400 274 / 1e-89 RING/U-box superfamily protein (.1.2) AT3G13430 237 / 1e-75 RING/U-box superfamily protein (.1.2.3) AT3G19950 149 / 6e-42 RING/U-box superfamily protein (.1) AT2G40830 109 / 6e-27 RHC1A RING-H2 finger C1A (.1.2.3) AT3G56580 104 / 3e-25 RING/U-box superfamily protein (.1.2.3) AT3G46620 97 / 3e-22 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G08139 95 / 2e-21 RING/U-box superfamily protein (.1) AT5G20910 93 / 3e-21 AIP2 ABI3-interacting protein 2, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G223200 [exp] 460 / 1e-161 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.013G060500 [exp] 241 / 6e-77 AT1G55530 207 / 2e-64 RING/U-box superfamily protein (.1) Potri.019G032500 [exp] 194 / 5e-58 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 146 / 8e-41 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 145 / 1e-40 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 145 / 4e-40 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 142 / 8e-39 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.006G032100 [exp] 114 / 9e-29 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3) Potri.016G029300 [exp] 111 / 9e-28 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013397 [exp] 291 / 9e-96 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10002637 [exp] 239 / 3e-75 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10020258 [exp] 238 / 7e-72 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10010179 [exp] 144 / 2e-40 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10030755 [exp] 116 / 2e-29 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10013235 [exp] 114 / 5e-29 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10025612 [exp] 105 / 3e-25 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1) Lus10028063 [exp] 105 / 4e-25 AT1G60360 224 / 9e-71 RING/U-box superfamily protein (.1) Lus10031422 [exp] 100 / 9e-24 AT5G64920 210 / 5e-66 COP1-interacting protein 8 (.1) Lus10004712 [exp] 101 / 1e-23 AT5G59550 294 / 6e-97 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain CL0167 [poplar] [flax] Zn_Beta_Ribbon PF14369 [poplar] [flax] zinc_ribbon_9 zinc-ribbon
Representative CDS sequence Show only first row Show all	>Potri.001G001500.4 pacid=42788011 polypeptide=Potri.001G001500.4.p locus=Potri.001G001500 ID=Potri.001G001500.4.v4.1 annot-version=v4.1 ATGGAGGAAGCAATGGCTGCACGGTACTGGTGCTATATGTGCTCTCAAATGGTGAATCCCGTCATGGAAGTTGAGATCAAATGCCCTTTTTGCCAAAGTG GGTTCATTGAAGAAATGAGTAGTAGCACAGGGGATACTCAGGTTCCTGATTCTGAATTTGGATCTGATCGTGCCCTCTCACTTTGGGCTCCAATCTTGCT TGGCATGATGGGAAATTCTCGTCGCCGTAGAAGGCTTAGAAGGATGGAGTATGAAGAAGGTGAGGATGACAATGATGATGGTGAAGCAAACCTTGGAGGA GAGACTGAGTTTGAGCATGAAATTGAATCATTCATAAGGAGGAGGAGGAGGAGCAGAAGAAGTTCAGCTACAATACTGCAATTACTTCAAGGAATTCGTG CTGGAATTTTGGCATCAGAATCTGAGAACTCAGAAGGAGATAGGGATGGGGAGAGGGACAGGGACCGGGACAGGGACAGAGAGCGTGTCATTTTGATCAA TCCTTTTAATCAAAATATTATTGTTCAGGGTTCTTATGATTCAAACAATGATGAAAACCAGAATCAAAATCCAGTTGGGTCATTCGGTGATTATTTCATT GGACCTGGCTTGGATTTGTTATTGCAGCACTTGGCAGATAATGATCCCAATAGATATGGAACTCTGCCAGCTCAAAAGGAAGCCGTTGAAGCATTGCCTA CTGTGATCATCAAGGAGCCTTTGCAGTGTTCAGTGTGCTTGGATGATTTTGAGATTGGCTCCAAGGCAAGGGAAATGCCATGTAAGCACAAGTTTCATAG TGGCTGTATATTGCCATGGCTGGAGCTTCATAGTTCCTGTCCAGTTTGCAGGCATCAGTTGCCTGCTGATGAGTCCAAGCTTGATTCTGAGAGAGCTAGA AATAGCAGTGATCGGAGGGAGTTTGAGAATACTAACAGTGAAAGTAATATTAGTCATGGAATTAGTGTTGAAGAGGGAGACAGTGAAGAAAGAAGTGGAA ATGGGAGAAGTTTTTCCTTTCCATGGCCTTTCAATAGCTTGTTTTCATCTTCATCGGGTTCGCAATCTGGTGGAAACCATCCATCCTCAGCAGCATCATC CTCTCCAGCGAATGCACCTGGAAGCACTTCTCAAACAGATGAGAATTGA
AA sequence Show only first row Show all	>Potri.001G001500.4 pacid=42788011 polypeptide=Potri.001G001500.4.p locus=Potri.001G001500 ID=Potri.001G001500.4.v4.1 annot-version=v4.1 MEEAMAARYWCYMCSQMVNPVMEVEIKCPFCQSGFIEEMSSSTGDTQVPDSEFGSDRALSLWAPILLGMMGNSRRRRRLRRMEYEEGEDDNDDGEANLGG ETEFEHEIESFIRRRRRSRRSSATILQLLQGIRAGILASESENSEGDRDGERDRDRDRDRERVILINPFNQNIIVQGSYDSNNDENQNQNPVGSFGDYFI GPGLDLLLQHLADNDPNRYGTLPAQKEAVEALPTVIIKEPLQCSVCLDDFEIGSKAREMPCKHKFHSGCILPWLELHSSCPVCRHQLPADESKLDSERAR NSSDRREFENTNSESNISHGISVEEGDSEERSGNGRSFSFPWPFNSLFSSSSGSQSGGNHPSSAASSSPANAPGSTSQTDEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Potri.001G001500 [exp]	0	1
AT1G67040			unknown protein		Potri.004G098300 [exp]	11.48	0.7655
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.002G259200 [exp]	14.62	0.7884
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Potri.008G097100 [exp]	15.03	0.7749
AT1G10290		DRP2A, ADL6	DYNAMIN-RELATED PROTEIN 2A, dy...		Potri.013G096775 [exp]	43.72	0.6654
AT5G40740			unknown protein		Potri.001G337600 [exp]	57.94	0.7025
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Potri.006G090300 [exp]	62.44	0.7104
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Potri.001G161600 [exp]	63.60	0.7410
AT1G26850			S-adenosyl-L-methionine-depend...		Potri.008G147800 [exp]	85.78	0.7226
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Potri.012G015100 [exp]	86.60	0.7301
AT3G49800			BSD domain-containing protein ...		Potri.014G008400 [exp]	89.81	0.7200

Compare expression of checked genes

Potri.001G001500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.