Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56350 913 / 0 Pyruvate kinase family protein (.1) AT4G26390 879 / 0 Pyruvate kinase family protein (.1) AT5G63680 815 / 0 Pyruvate kinase family protein (.1) AT5G08570 815 / 0 Pyruvate kinase family protein (.1) AT3G04050 744 / 0 Pyruvate kinase family protein (.1) AT3G55650 735 / 0 Pyruvate kinase family protein (.1) AT3G25960 728 / 0 Pyruvate kinase family protein (.1) AT3G55810 684 / 0 Pyruvate kinase family protein (.1) AT3G52990 404 / 4e-136 Pyruvate kinase family protein (.1.2) AT2G36580 399 / 2e-134 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G223100 [exp] 971 / 0 AT5G56350 915 / 0.0 Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 840 / 0 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 827 / 0 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.010G254900 [exp] 820 / 0 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1) Potri.008G002500 [exp] 818 / 0 AT5G08570 933 / 0.0 Pyruvate kinase family protein (.1) Potri.006G117400 [exp] 398 / 6e-134 AT3G52990 988 / 0.0 Pyruvate kinase family protein (.1.2) Potri.010G233200 [exp] 392 / 2e-131 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.008G027100 [exp] 386 / 4e-129 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.003G088700 [exp] 276 / 5e-86 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010329 [exp] 955 / 0 AT5G56350 930 / 0.0 Pyruvate kinase family protein (.1) Lus10013396 [exp] 950 / 0 AT5G56350 931 / 0.0 Pyruvate kinase family protein (.1) Lus10041003 [exp] 832 / 0 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1) Lus10017364 [exp] 806 / 0 AT5G08570 907 / 0.0 Pyruvate kinase family protein (.1) Lus10010159 [exp] 792 / 0 AT5G08570 896 / 0.0 Pyruvate kinase family protein (.1) Lus10003439 [exp] 784 / 0 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10026875 [exp] 766 / 0 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10013449 [exp] 484 / 7e-171 AT5G08570 543 / 0.0 Pyruvate kinase family protein (.1) Lus10008644 [exp] 396 / 4e-133 AT3G52990 967 / 0.0 Pyruvate kinase family protein (.1.2) Lus10035581 [exp] 396 / 4e-133 AT3G52990 941 / 0.0 Pyruvate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [poplar] [flax] PK_TIM PF00224 [poplar] [flax] PK Pyruvate kinase, barrel domain CL0151 [poplar] [flax] PF02887 [poplar] [flax] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Potri.001G001600.1 pacid=42789562 polypeptide=Potri.001G001600.1.p locus=Potri.001G001600 ID=Potri.001G001600.1.v4.1 annot-version=v4.1 ATGACGGCCAGCAACGGTGGTGGAGATGCAGTGACAGCAGCAGCAGGAGTTATGGAGATGAGGCCGAAGACCAAGATCGTCTGTACTCTGGGACCTGCAT CAAGATCTGTCCCTATGATCGAAAAACTCTTGAGGGCTGGCATGAACGTCGCTCGCTTCAACTTCTCTCATGGATCTCATGAGTATCATCAAGAAACCCT TGATAATCTCAAGGCCGCCATGGTCAATACTGGCATTCTCTGTGCTGTCATGCTTGACACCAAGGGACCGGAGATTCGTACTGGTTTCCTGAAGGATGGG AAACCCATCCAGCTCAAACTGGGTCAAGAAATCACCATATCTACTGACTATAGCTTAAAGGGTGATGAGAATATGATTTGCATGAGCTATAAAAAGTTGG CCGTGGATGTCAAACCTGGAATGGTAATACTTTGTGCAGATGGCACAATATCATTTACAGCATTATCCTGTGATACAAAAGCTGGTTTGGTTCGATGTCG CTGTGAGAATTCTGCAACTCTTGGTGAGAGAAAAAATGTTAATCTCCCAGGAGTTATAGTGGATCTTCCAACCTTGACAGAGAAGGACAAGGAAGATATA TTGGCTTGGGGGGTTCCCAATAAAATTGATATGATTGCTTTATCTTTTGTTCGTAAAGGCTCAGACCTTGTGGAGGTTCGGAAGTTGCTTGGAGAGCATT CTAAGAACATCCTTCTCATGTCCAAGGTTGAAAATCAAGAAGGAGTGGCAAATTTCGATGATATTTTAGCAAATTCAGATGCATTTATGGTGGCACGCGG TGACCTTGGAATGGAAATCCCAATTGAAAAAATTTTCCTTGCTCAGAAAGTGATGATCTACAAGTGCAACATCCAAGGAAAACCAGTTGTCACTGCAACA CAGATGTTGGAGTCCATGATCAAGTCCCCCCGACCAACTAGAGCAGAAGCCACTGATGTTGCCAATGCAGTTCTTGATGGTAGTGACTGTGTGATGCTGA GTGGTGAAACAGCAGCTGGAGCTTATCCAGAACTTGCTGTTCGGACCATGGCCAAAATATGCATAGAAGCTGAAAACACGCTTGATTATGGAGATGTCTT TAAAAGAACTATGGAACACTCACCTGTGCCCATGAGCCCATTGGAGAGTCTGGCCTCATCTGCTGTTAGAACTGCCAATTCAGTAAAAGCATCTCTTATA CTGGTTTTAACCAGGGGAGGAAGTACTGCAAAACTGGTGGCTAAATACAGACCGGGCATACCCATTTTGTCCGTGGTTGTCCCAGAGATTCAGACTGATT CCTTTGATTGGTCATGCAGTGATGAAGCTCCTGCAAGGCATAGCCTTATATTCCGTGGGTTGGTGCCGGTTTTATATGCAGGATCTGCTAAAGCCTCAAA TGCTGAGACAACAGAAGAAGCTTTGGATTTTTCCCTTCAACATGCCAAGGGGAAGGGACTATGCAGGACTGGGGATCCCGTGGTGGCTCTGCACCGGGTT GGAACTGCATCTGTTATCAAGATTATAACAGTGAAGTGA
AA sequence Show only first row Show all	>Potri.001G001600.1 pacid=42789562 polypeptide=Potri.001G001600.1.p locus=Potri.001G001600 ID=Potri.001G001600.1.v4.1 annot-version=v4.1 MTASNGGGDAVTAAAGVMEMRPKTKIVCTLGPASRSVPMIEKLLRAGMNVARFNFSHGSHEYHQETLDNLKAAMVNTGILCAVMLDTKGPEIRTGFLKDG KPIQLKLGQEITISTDYSLKGDENMICMSYKKLAVDVKPGMVILCADGTISFTALSCDTKAGLVRCRCENSATLGERKNVNLPGVIVDLPTLTEKDKEDI LAWGVPNKIDMIALSFVRKGSDLVEVRKLLGEHSKNILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTAT QMLESMIKSPRPTRAEATDVANAVLDGSDCVMLSGETAAGAYPELAVRTMAKICIEAENTLDYGDVFKRTMEHSPVPMSPLESLASSAVRTANSVKASLI LVLTRGGSTAKLVAKYRPGIPILSVVVPEIQTDSFDWSCSDEAPARHSLIFRGLVPVLYAGSAKASNAETTEEALDFSLQHAKGKGLCRTGDPVVALHRV GTASVIKIITVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56350			Pyruvate kinase family protein...		Potri.001G001600 [exp]	0	1
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Potri.002G252600 [exp]	4.00	0.7507	Pt-RPT2.2
AT3G52990			Pyruvate kinase family protein...		Potri.006G117400 [exp]	8.12	0.7352
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.010G205700 [exp]	12.64	0.6855	Pt-HSP70.5
AT3G06145			unknown protein		Potri.010G030701 [exp]	15.29	0.6786
AT1G13560		AAPT1, ATAAPT1	aminoalcoholphosphotransferase...		Potri.010G133800 [exp]	21.35	0.6693	Pt-AAPT1.1
AT1G53750		RPT1A	regulatory particle triple-A 1...		Potri.006G216600 [exp]	28.91	0.7284	RPT1.5
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Potri.005G157700 [exp]	29.98	0.6759	VF14.2
AT5G10160			Thioesterase superfamily prote...		Potri.003G020300 [exp]	30.69	0.7139
AT4G31180			Class II aminoacyl-tRNA and bi...		Potri.006G085400 [exp]	31.81	0.6672
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Potri.009G133000 [exp]	33.48	0.6857

Compare expression of checked genes

Potri.001G001600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.