Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56360 539 / 0 PSL4 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) AT2G42390 171 / 4e-49 protein kinase C substrate, heavy chain-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G223000 [exp] 905 / 0 AT5G56360 587 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Potri.013G060266 [exp] 247 / 1e-77 AT5G56360 218 / 3e-67 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Potri.013G060332 [exp] 235 / 2e-73 AT5G56360 227 / 8e-71 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Potri.019G092100 [exp] 162 / 2e-46 AT2G42390 204 / 6e-67 protein kinase C substrate, heavy chain-related (.1) Potri.013G124000 [exp] 161 / 1e-45 AT2G42390 215 / 3e-71 protein kinase C substrate, heavy chain-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013398 [exp] 658 / 0 AT5G56360 611 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Lus10010326 [exp] 646 / 0 AT5G56360 604 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Lus10026874 [exp] 241 / 2e-70 AT5G56360 236 / 1e-68 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Lus10002183 [exp] 158 / 1e-44 AT2G42390 206 / 2e-67 protein kinase C substrate, heavy chain-related (.1) Lus10039901 [exp] 88 / 3e-18 AT1G06260 346 / 4e-117 Cysteine proteinases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12999 [poplar] [flax] PRKCSH-like Glucosidase II beta subunit-like
Representative CDS sequence Show only first row Show all	>Potri.001G001700.1 pacid=42789615 polypeptide=Potri.001G001700.1.p locus=Potri.001G001700 ID=Potri.001G001700.1.v4.1 annot-version=v4.1 ATGAAAGGAGAGAGCAGCAGCAGCTTCTTCAGGTTATTTCCTCCGATTGTTTATGCACTCTTATGTACTACAGCTTCCATTGCTGCATCAGCTGTTGTTC CAATTAACCCTTTTCTTGGAATCCCTCCTCAAGATGAGAATTATTACAAGGCATCATCACCTACTATAAAATGTAAAGATGGATCCGCTACTTTCACCAA GGCTCACCTCAATGATGACTTCTGTGATTGCCCTGATGGTACCGATGAGCCTGGCACATCAGCATGCCCCGGTGGGCAATTCTATTGTAGAAATGCAGGG CATGATCCCGTTTTCTTATTCTCTTCCAGAGTCAATGATGGCATCTGTGATTGTTGTGATGGGAGTGATGAGTATGATGGCGAAGTTAAGTGTCCAAATA CATGCTGGGAAGCTGGCAAAGTGGCAAGAGATAAGTTGAAGAAAAAGATTGCTACATATAAGGAAGGGGTTGCGTTGAGAAAAAAAGAAGTTGAACAAGC AAAAATGGCATTCGCCAAAGATGTGGCTGAACTATCCAAGCTAAAAAATGAGGAGAAGATACTAAAAGGGCTTGTTGAACAGCTTAAAGAGCTTAAAGAA CAGATAGAGAAGACAGAAGAGAAAGAACGTTTGCAGAAAGAAAAGGAAGAGAAACAAAGGAAAGAAGCTGAAGAAAAGGCCAATGGGGAAAAAAGTGCAG TTAAGGGGGGAGCTAACCTAGAAAAAGGCCACGCTGAGGAGAAAATCGACAATGAAGACAAAGATATGGAAAACAAACATGATGAAATTGGTGTTTTGGA TGATTCTCCTGCATATCAGGATGTTGTGGACGAGTTTGCTGATCATGGAGCTGAAGATGAAAGTGGTGATGTTTCCAAAATTGAAGGATCTCCAGTTAGC GAAGTGGAGAAGCATGAGGGACAAGAGGATGAAGAGCCTGTCACCACAAAAATCAAGGATGAGTCTACACTTGTGCCTGAAACTGGCCATGATGCTGGAA ATGAGGTGTCTCATGCTCAACCTATGGAAGAGGAGAAGGATGAATCCACTGATGCAAAAGGATTGTCAAAGGAAGAGTTGGGCCGCCTTGTTGGCTCTCG TTGGACAGGAAATTCAGAGAAGCAAACTGAGGAAGTTAGGGATACAAAGGACAACGACCATGGGGACCATGAAGAGATGGCCCATGACACGCATGATGAG AAATATGATGGCTATGCTTCAGAAACTGCTGATGAAACTGGCAAGGATGATGATGTTGATGGAGAAGATGATGTAGATGAGACTTATGAAGAGGAAGTTC ACGATGATGTTGATGATGCTCCTTATAAATCTGACTCTGATGATGAAGTTGAATTTTCAGATACAACCTCCCCAGGTAATCCATCTTGGTTGGAGAATAT ACAGCAAACCTTTAGGAGCATTCTAGAAGCCTTTAAATTATTCCAAACTCCAGTGGATAAATCAGAGGCTGCTCGAGTACGCAAGGAATACGACGAGTCC AGTGCTAAGTTGTCTAAAATACAGTCAAGGATATCAAGGCTGACACAAAAGCTCGAACATGATTTTGGGACAGAGAAGGAGTTCTATTCATTCTATGATC GCTGTTTTGAGAGCAAGCAGAACAAGTATGTTTACAAAGTCTGCTCATTCAAACAAGCTTCCCAGTCAGAGGGCCACTCAACAACTCGTTTGGGTCGCTG GGAGAAATTCGAGGACTCATACCGAGTTATGGTCTTTTCAAATGGGGACACGTGCTGGAATGGGCCTGATCGAAGTTTGAAGGTCAGGCTAAGATGCGGA CTGGATAATGAGGTTACAGATGTAGATGAACCAAGTCGTTGCGAGTATGTGGCATTGCTATCTACCCCAGCCCTTTGCATAGAAGGAAAGCTTAAGGAAC TGGAAAATAAACTAGAGTTGATGAACAAACAACAGCCACGGAGCCATGATGAACTTTAA
AA sequence Show only first row Show all	>Potri.001G001700.1 pacid=42789615 polypeptide=Potri.001G001700.1.p locus=Potri.001G001700 ID=Potri.001G001700.1.v4.1 annot-version=v4.1 MKGESSSSFFRLFPPIVYALLCTTASIAASAVVPINPFLGIPPQDENYYKASSPTIKCKDGSATFTKAHLNDDFCDCPDGTDEPGTSACPGGQFYCRNAG HDPVFLFSSRVNDGICDCCDGSDEYDGEVKCPNTCWEAGKVARDKLKKKIATYKEGVALRKKEVEQAKMAFAKDVAELSKLKNEEKILKGLVEQLKELKE QIEKTEEKERLQKEKEEKQRKEAEEKANGEKSAVKGGANLEKGHAEEKIDNEDKDMENKHDEIGVLDDSPAYQDVVDEFADHGAEDESGDVSKIEGSPVS EVEKHEGQEDEEPVTTKIKDESTLVPETGHDAGNEVSHAQPMEEEKDESTDAKGLSKEELGRLVGSRWTGNSEKQTEEVRDTKDNDHGDHEEMAHDTHDE KYDGYASETADETGKDDDVDGEDDVDETYEEEVHDDVDDAPYKSDSDDEVEFSDTTSPGNPSWLENIQQTFRSILEAFKLFQTPVDKSEAARVRKEYDES SAKLSKIQSRISRLTQKLEHDFGTEKEFYSFYDRCFESKQNKYVYKVCSFKQASQSEGHSTTRLGRWEKFEDSYRVMVFSNGDTCWNGPDRSLKVRLRCG LDNEVTDVDEPSRCEYVALLSTPALCIEGKLKELENKLELMNKQQPRSHDEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.001G001700 [exp]	0	1
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.015G130701 [exp]	4.47	0.8936
					Potri.001G306100 [exp]	5.29	0.8786
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.013G070200 [exp]	7.74	0.8214
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.003G223000 [exp]	7.93	0.8658
AT5G09880			Splicing factor, CC1-like (.1)		Potri.007G009800 [exp]	8.48	0.8615
AT4G31880			unknown protein		Potri.018G109600 [exp]	14.66	0.8743
AT5G36740			Acyl-CoA N-acyltransferase wit...		Potri.002G051400 [exp]	15.39	0.8860
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Potri.005G172800 [exp]	15.87	0.8218	Pt-PIP5.1
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Potri.010G166100 [exp]	20.39	0.8630
					Potri.013G064900 [exp]	20.44	0.8546

Compare expression of checked genes

Potri.001G001700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.