Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26330 891 / 0 ATSBT3.18, UNE17 UNFERTILIZED EMBRYO SAC 17, Subtilisin-like serine endopeptidase family protein (.1) AT1G32940 567 / 0 ATSBT3.5 Subtilase family protein (.1) AT4G10520 565 / 0 Subtilase family protein (.1) AT1G32960 561 / 0 ATSBT3.3 Subtilase family protein (.1) AT4G10510 560 / 0 Subtilase family protein (.1) AT4G10540 560 / 0 Subtilase family protein (.1) AT4G10550 557 / 0 Subtilase family protein (.1.2.3) AT2G04160 552 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT1G32950 551 / 0 Subtilase family protein (.1) AT4G21650 534 / 1e-179 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G161400 [exp] 669 / 0 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Potri.001G450600 [exp] 624 / 0 AT1G32960 772 / 0.0 Subtilase family protein (.1) Potri.011G150900 [exp] 608 / 0 AT1G32960 744 / 0.0 Subtilase family protein (.1) Potri.001G450401 [exp] 607 / 0 AT4G10550 938 / 0.0 Subtilase family protein (.1.2.3) Potri.011G151200 [exp] 601 / 0 AT1G32960 906 / 0.0 Subtilase family protein (.1) Potri.014G171600 [exp] 566 / 0 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.009G144500 [exp] 559 / 0 AT5G59810 508 / 9e-170 Subtilase family protein (.1) Potri.005G067200 [exp] 553 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.007G102250 [exp] 549 / 0 AT2G04160 821 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016064 [exp] 583 / 0 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10035478 [exp] 569 / 0 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Lus10038774 [exp] 533 / 5e-179 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10039086 [exp] 530 / 5e-178 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10007083 [exp] 526 / 4e-176 AT5G45650 956 / 0.0 subtilase family protein (.1) Lus10039085 [exp] 524 / 1e-175 AT5G59810 827 / 0.0 Subtilase family protein (.1) Lus10020458 [exp] 524 / 3e-175 AT5G45650 940 / 0.0 subtilase family protein (.1) Lus10039087 [exp] 522 / 9e-175 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10002780 [exp] 516 / 4e-172 AT5G45650 909 / 0.0 subtilase family protein (.1) Lus10023048 [exp] 514 / 7e-172 AT5G59810 762 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.001G002200.2 pacid=42792304 polypeptide=Potri.001G002200.2.p locus=Potri.001G002200 ID=Potri.001G002200.2.v4.1 annot-version=v4.1 ATGGGAGACATGGCAACTTATCTTCAATGTTTTTGGGGCCTATTTCTCTCACTCTCTCTTTATTTTATTCAATCAGAATCCACATCTCATGTTTATGTTG TCTATTTAGGACGAAGCCAATTTCACGATCCTTTGGTCACTTCAAAGTCTCACATTCAACTCCTTTCTAATGTGTTTTCCAGTGAAGAAGAAGCTAAGCA ATCCATGCTCTATAGCTACAAGCATGGTTTCTCTGGTTTTTCGGCAAAGCTCAACTCAACCCAAGCAACTACCTTAGCCAATACGAAAGGAGTGATATCA GTTTTTAGAAGCAAGGTACTAAAGTTGCACACAACAAGAAGCTGGGACTTCTTAGGCCTTACCTTGTATAGCGGTGAAGTAACTCCGTTGCAATTGACCT ACGGTGATGATGTTGTAGTTGGGGTCTTTGATACAGGTATATGGCCCGAGTCTGAGAGTTTCAAGGAAGAGCAAGGCCTGGGGCCAATTCCATCTTCTTG GAAGGGAAAATGTGTTAAAGGGGAAGATTTTGAACCAAAAATGGACTGCAACCGGAAGTTAATTGGTGCACGTTACTACCTCCAAGGCTTCGAACAAGAA TTTGGGTCATTAAATACAAGTGGCAACCCAGAATATCGATCAGCTCGAGACTTTCTTGGTCATGGGACACACACAGCTTCAACAGCAGTAGGATCCATGG TGAAGAATGCAAGCTTCCTTGATTTTGCACTGGGAACTGCTAGGGGTGGAGCTCCAAGGGCTAGGTTAGCAGTGTACAAGGTATGTTGGGGCAAAAATCT TGATGGGAATTGTGCAGAAGCTGACATTCTTGCTGCTTTTGATGACGCTTTACATGATGGGGTTAATATAATCTCGGCCTCGTTTGGTTCCGACCCTCCA TTGACTCCATTCTTTTCATCAAGTGCTGATATTGGTTCATTTCATGCAATGCAACTGGGTGTAAGTTCAGTGTTCTCAGCTGGAAATGCTGGCCCTGATC CATCTCTGGTGGGAAATGTCGCACCATGGACAATATCAGTTGCTGCTTCCTCTATTGATCGCGTATTTCCAACTGAGATAGTTATTGACAGTAACTTCTC TGTCATGGGGGAAAGCTTAATTACAAATGAGATTAACGGAAGATTGGTGAGCGCATTCTCCTATTTTGCTGATGGGGCTTGCTTGATGGAGAATTGGAAC AAAAGAGTAGCTAAAAGGAAGATTATTCTATGCTTCTCCAACAGAGGCCCAGTGCCATCAGCTGGAATTGCACAAGCAGCAGTCTTGGCGGCTAGTGGAT CGGGACTGATCTTCGTTGAACCTCCCACCATGCAAATTGCTGATGTTGATATCATCCCCACAGTGCGTGTCGATGTTGGTCAAGGGAATAAAATTCAAAT CTATATTGCTCAATCTTCTCAGAATCCTGTGGTGAAGATATTGCCGAGTAAAACAGCTATTGGAAAGTCACCAGCACCTGTTGTAGCATCCTTCTCTTCT AGAGGCCCGAGTCCAATTTCTCCTGACATCCTCAAGCCAGATGTAACTGCTCCAGGAGTTACCATATTGGCAGCATGGCCCGCCAAGACTTCTCCAACAT TGTTACCATTTGATGATCGCCGTGTGAATTGGAACTTTCAATCAGGAACATCAATGTCATGCCCTCATGTGTCTGGAGTAGTCGCACTTCTCAAATCAGC TCACCCTGATTGGTCTCCCGCAGCCATTAGATCTGCTGTAATGACCACAGCATATACAAGGGACAACACATTTGACAGCATCCTAGCTGGAGGATCAAGG AAAGTTTCCGACCCCTTTGACATTGGTGCTGGCCACATACACCCTTCCAAAGCAATGGATCCGGGCCTAGTTTATGACATGAAAACCAGAGACTACATTA TCTTCCTCTGCAACATTGGCTACAACAAAAATCAAATAAACATGTTGGTTCTTCCATCTACTGGGACTGACACAAGCTGCTCTCATGTACACCAAACAAA CTCCAACATAAACTACCCTTCAATCACAGTTTCCAATCTCCAATCCACAATGACCATTAAGAGAACTGTTAGAAATGTGGGTAGAAAAACAACTGCTATA TACTTTGTTAGCATTGTGAAGCCTCATGGAGTGGAAGTGCTAATCTGGCCTAGGATTTTAATCTTCTCATGCTTCAAGGAGGAACTCTCTTATTTTGTGA CACTTAAACCACTCAAGAAATCTCAAGGGAGATATGATTTTGGAGAGATAGTGTGGTCTGATGGATTCCACAAAGTTAGGAGTCCGTTGGTTGTGTTAGT GAACAACAGCAATGATGATGATGATGATGATGATGATCCTAGTGTTTTTGCATCTAATATCACTGCAGCTAGCAGCAGTATTTAG
AA sequence Show only first row Show all	>Potri.001G002200.2 pacid=42792304 polypeptide=Potri.001G002200.2.p locus=Potri.001G002200 ID=Potri.001G002200.2.v4.1 annot-version=v4.1 MGDMATYLQCFWGLFLSLSLYFIQSESTSHVYVVYLGRSQFHDPLVTSKSHIQLLSNVFSSEEEAKQSMLYSYKHGFSGFSAKLNSTQATTLANTKGVIS VFRSKVLKLHTTRSWDFLGLTLYSGEVTPLQLTYGDDVVVGVFDTGIWPESESFKEEQGLGPIPSSWKGKCVKGEDFEPKMDCNRKLIGARYYLQGFEQE FGSLNTSGNPEYRSARDFLGHGTHTASTAVGSMVKNASFLDFALGTARGGAPRARLAVYKVCWGKNLDGNCAEADILAAFDDALHDGVNIISASFGSDPP LTPFFSSSADIGSFHAMQLGVSSVFSAGNAGPDPSLVGNVAPWTISVAASSIDRVFPTEIVIDSNFSVMGESLITNEINGRLVSAFSYFADGACLMENWN KRVAKRKIILCFSNRGPVPSAGIAQAAVLAASGSGLIFVEPPTMQIADVDIIPTVRVDVGQGNKIQIYIAQSSQNPVVKILPSKTAIGKSPAPVVASFSS RGPSPISPDILKPDVTAPGVTILAAWPAKTSPTLLPFDDRRVNWNFQSGTSMSCPHVSGVVALLKSAHPDWSPAAIRSAVMTTAYTRDNTFDSILAGGSR KVSDPFDIGAGHIHPSKAMDPGLVYDMKTRDYIIFLCNIGYNKNQINMLVLPSTGTDTSCSHVHQTNSNINYPSITVSNLQSTMTIKRTVRNVGRKTTAI YFVSIVKPHGVEVLIWPRILIFSCFKEELSYFVTLKPLKKSQGRYDFGEIVWSDGFHKVRSPLVVLVNNSNDDDDDDDDPSVFASNITAASSSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26330		ATSBT3.18, UNE1...	UNFERTILIZED EMBRYO SAC 17, Su...		Potri.001G002200 [exp]	0	1
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Potri.016G082700 [exp]	9.05	0.7806
AT3G57830			Leucine-rich repeat protein ki...		Potri.006G057500 [exp]	185.90	0.7016
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Potri.007G018400 [exp]	190.42	0.7032	ROT3.1
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.006G097901 [exp]	193.20	0.7012
AT5G66800			unknown protein		Potri.007G042600 [exp]	193.37	0.7088

Compare expression of checked genes

Potri.001G002200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.