Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56460 605 / 0 Protein kinase superfamily protein (.1) AT5G01020 452 / 4e-159 Protein kinase superfamily protein (.1) AT2G05940 415 / 1e-143 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT2G07180 410 / 3e-142 Protein kinase superfamily protein (.1.2) AT2G26290 406 / 1e-140 ARSK1 root-specific kinase 1 (.1) AT5G15080 402 / 3e-138 Protein kinase superfamily protein (.1) AT3G28690 398 / 3e-138 Protein kinase superfamily protein (.1.2.3) AT1G61590 392 / 3e-135 Protein kinase superfamily protein (.1) AT3G01300 391 / 6e-134 Protein kinase superfamily protein (.1) AT5G35580 391 / 7e-134 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G222600 [exp] 662 / 0 AT5G56460 585 / 0.0 Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 459 / 2e-161 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 458 / 4e-161 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.006G141500 [exp] 433 / 1e-150 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 428 / 2e-148 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 427 / 3e-148 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 423 / 4e-147 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 423 / 2e-146 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.001G128500 [exp] 408 / 2e-141 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013406 [exp] 597 / 0 AT5G56460 630 / 0.0 Protein kinase superfamily protein (.1) Lus10010319 [exp] 584 / 0 AT5G56460 613 / 0.0 Protein kinase superfamily protein (.1) Lus10036762 [exp] 442 / 3e-154 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 422 / 7e-146 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 421 / 2e-145 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10006643 [exp] 409 / 3e-141 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10038087 [exp] 408 / 3e-141 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10030796 [exp] 405 / 4e-139 AT5G15080 691 / 0.0 Protein kinase superfamily protein (.1) Lus10040588 [exp] 402 / 1e-138 AT2G07180 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10034897 [exp] 403 / 3e-138 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G002300.3 pacid=42788448 polypeptide=Potri.001G002300.3.p locus=Potri.001G002300 ID=Potri.001G002300.3.v4.1 annot-version=v4.1 ATGGGAAATTGTTGCTGTAGATGGGAGCTTTCTGTATACAATGCAAAATCAGTCTCCCCGAAAGAGCAAGGTCCATCAGGAAGACCAATACAGGATGATA GAAAGCTACCTTCAAATCCTGAAGAAGTAGAAGACCTGCGTCGTGATTCAGCGGCAAATCCGTTGATTGCATTTACGTTTGATGAACTAAAATTAATCAC AGAAAATTTTAGGCAAGATCATTTGCTGGGTGGAGGAGGATTTGGAAGTGTTTATAAGGGAATCATTGCTAAAGATTCTAGAGAGGAGCTTCAGCCCCTT CAAGTTGCTGTTAAGGTTCATGATGGTGATAACAGTTACCAAGGCCATAGAGAATGGCTGGCAGAAGTCATATTCCTGGGGCAGCTTTCTCATCCAAACC TGGTGAAATTGATTGGATATTGCTGTCAGGACGAACATCGGGTGCTAATATATGAGTATATGGCTCGGGGAAGTGTGGAAAACAATCTGTTTTCAAGAGT GTTGCTCCCTCTTCCATGGTCTATTAGAATGAAGATTGCCTTTGGTGCAGCAAAGGGACTCGCTTTTCTTCATGAAGCTGAAAAACCTGTCATCTATCGT GATTTTAAGACATCTAACATTCTCTTGGACCAGGACTACAACGCAAAGCTCTCTGACTTTGGCCTTGCAAAAGATGGACCTATGGGAGACAAAACTCATG TTTCCACTCGCATAATGGGGACTTACGGGTATGCAGCACCTGAATATATAATGACAGGGCATTTGACTCCAAGAAGTGATGTATACAGCTTCGGTGTTGT TCTTCTTGAACTTCTGACAGGAAGAAAATCATTAGACAAATCACGACCAGGCCGCGAGCAGAACCTAACGGATTGGGCTCTTCCCTTGCTTAAAGAGAGA AGGAAATTGCTCAACATTGTGGATCCAAGATTAGAAGGAGACTATCCTATTAAAGGATTTCAAAAGGCGGCAATGCTAGCTTATCATTGCTTGAACCGAA ATCCGAAAGCAAGACCTCTGATGCGAGATATCGTTGATTCCTTGGAGCCTTTGCAAGAACCTGAAGATGTTCCGAACAAAAAAAACTGTGTTCACTGTGA TTAA
AA sequence Show only first row Show all	>Potri.001G002300.3 pacid=42788448 polypeptide=Potri.001G002300.3.p locus=Potri.001G002300 ID=Potri.001G002300.3.v4.1 annot-version=v4.1 MGNCCCRWELSVYNAKSVSPKEQGPSGRPIQDDRKLPSNPEEVEDLRRDSAANPLIAFTFDELKLITENFRQDHLLGGGGFGSVYKGIIAKDSREELQPL QVAVKVHDGDNSYQGHREWLAEVIFLGQLSHPNLVKLIGYCCQDEHRVLIYEYMARGSVENNLFSRVLLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIYR DFKTSNILLDQDYNAKLSDFGLAKDGPMGDKTHVSTRIMGTYGYAAPEYIMTGHLTPRSDVYSFGVVLLELLTGRKSLDKSRPGREQNLTDWALPLLKER RKLLNIVDPRLEGDYPIKGFQKAAMLAYHCLNRNPKARPLMRDIVDSLEPLQEPEDVPNKKNCVHCD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56460			Protein kinase superfamily pro...		Potri.001G002300 [exp]	0	1
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Potri.002G033000 [exp]	4.89	0.8473	Pt-CYP722.2
AT1G43650			nodulin MtN21 /EamA-like trans...		Potri.005G192100 [exp]	5.83	0.8692
AT3G43630			Vacuolar iron transporter (VIT...		Potri.002G069400 [exp]	9.16	0.8595
AT3G57200			unknown protein		Potri.006G045500 [exp]	9.48	0.8401
AT3G22740		HMT3	homocysteine S-methyltransfera...		Potri.008G155900 [exp]	10.39	0.8434	HMT3.1
AT3G10910			RING/U-box superfamily protein...		Potri.019G057700 [exp]	12.96	0.8035
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120500 [exp]	13.41	0.8098
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Potri.002G018600 [exp]	13.96	0.8145	Pt-SSTP.2
					Potri.010G015100 [exp]	18.33	0.8367
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.006G221200 [exp]	21.16	0.7870

Compare expression of checked genes

Potri.001G002300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.