Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69310 51 / 2e-08 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2) AT5G46350 51 / 3e-08 WRKY ATWRKY8, WRKY8 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 8, WRKY DNA-binding protein 8 (.1) AT2G47260 51 / 3e-08 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1) AT4G18170 50 / 4e-08 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT1G29860 50 / 4e-08 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT5G64810 50 / 5e-08 WRKY ATWRKY51, WRKY51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) AT5G49520 50 / 6e-08 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT4G39410 50 / 7e-08 WRKY ATWRKY13, WRKY13 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) AT2G44745 49 / 7e-08 WRKY WRKY12 WRKY family transcription factor (.1) AT2G04880 49 / 1e-07 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G222501 [exp] 117 / 7e-35 AT5G07100 64 / 2e-13 WRKY DNA-binding protein 26 (.1.2) Potri.016G099900 [exp] 57 / 1e-10 AT5G43290 151 / 6e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 49, WRKY DNA-binding protein 49 (.1) Potri.006G087000 [exp] 55 / 9e-10 AT5G43290 163 / 2e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 49, WRKY DNA-binding protein 49 (.1) Potri.005G203200 [exp] 54 / 3e-09 AT4G18170 187 / 3e-57 WRKY DNA-binding protein 28 (.1) Potri.002G193000 [exp] 53 / 7e-09 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1) Potri.005G086400 [exp] 52 / 1e-08 AT4G39410 184 / 1e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Potri.007G078200 [exp] 52 / 1e-08 AT4G39410 189 / 4e-59 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Potri.014G118200 [exp] 52 / 1e-08 AT2G47260 190 / 5e-58 WRKY DNA-binding protein 23 (.1) Potri.002G059100 [exp] 52 / 2e-08 AT4G18170 176 / 1e-52 WRKY DNA-binding protein 28 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024380 [exp] 53 / 8e-09 AT5G43290 157 / 7e-47 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 49, WRKY DNA-binding protein 49 (.1) Lus10010851 [exp] 52 / 1e-08 AT5G43290 148 / 1e-43 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 49, WRKY DNA-binding protein 49 (.1) Lus10020832 [exp] 52 / 1e-08 AT4G39410 169 / 3e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Lus10004537 [exp] 52 / 2e-08 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10037094 [exp] 51 / 3e-08 AT1G69310 209 / 1e-65 WRKY DNA-binding protein 57 (.1.2) Lus10036891 [exp] 51 / 3e-08 AT1G69310 220 / 5e-70 WRKY DNA-binding protein 57 (.1.2) Lus10012322 [exp] 50 / 6e-08 AT2G04880 278 / 2e-89 zinc-dependent activator protein-1 (.1.2) Lus10012678 [exp] 50 / 6e-08 AT4G39410 169 / 4e-50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Lus10039331 [exp] 50 / 9e-08 AT4G11070 174 / 1e-51 WRKY family transcription factor (.1.2) Lus10001062 [exp] 49 / 1e-07 AT4G11070 169 / 5e-50 WRKY family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G002400.1 pacid=42788930 polypeptide=Potri.001G002400.1.p locus=Potri.001G002400 ID=Potri.001G002400.1.v4.1 annot-version=v4.1 ATGAGTGAAGTTTCTCCGACCAGAGAAACCTCCATGGAAACTGAGGAGGACAAAGAAGAGCAGCAGCAGCATACAGATCGAGGAAGGCGGAGATTGGTGC TGCCGGAAGATGGGTTTGAATGGAAGAAATATGGCCAAAAGTTCATCAAAAATATTGGAAAATTCAGGGGCTATTTTAGATGCCAGAAGCGAAATTGTAT GGCGAAGAAGAGAGCAGAATGGTCCAACCCAGAAAACCTTCGAATAGTATACGAGGGATCACACAGCCATGCCTCGTCTACACAAGATTCTTCTTCTGCT TCCTCACAAGGGACTCCTTCTTCCTCAGCTGCAAACCAGTACAACTTGTACACTCAATTCTTTGGAAATCAACCGGCTTCAAGCACGCACGATCAAGATC ATACTTGA
AA sequence Show only first row Show all	>Potri.001G002400.1 pacid=42788930 polypeptide=Potri.001G002400.1.p locus=Potri.001G002400 ID=Potri.001G002400.1.v4.1 annot-version=v4.1 MSEVSPTRETSMETEEDKEEQQQHTDRGRRRLVLPEDGFEWKKYGQKFIKNIGKFRGYFRCQKRNCMAKKRAEWSNPENLRIVYEGSHSHASSTQDSSSA SSQGTPSSSAANQYNLYTQFFGNQPASSTHDQDHT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47260	WRKY	ATWRKY23, WRKY2...	WRKY DNA-binding protein 23 (....		Potri.001G002400 [exp]	0	1
					Potri.016G116800 [exp]	3.16	0.8609
					Potri.010G007998 [exp]	7.93	0.8706
AT1G70170		MMP	matrix metalloproteinase (.1)		Potri.019G073400 [exp]	12.96	0.8538
					Potri.010G008031 [exp]	13.85	0.8569
AT5G43745			Protein of unknown function (D...		Potri.010G078600 [exp]	16.97	0.8344
					Potri.003G154150 [exp]	19.36	0.8395
					Potri.010G007921 [exp]	24.39	0.8500
					Potri.010G008020 [exp]	29.32	0.8423
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G072816 [exp]	30.19	0.8411
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Potri.001G348000 [exp]	31.49	0.8485

Compare expression of checked genes

Potri.001G002400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.