Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13470 1030 / 0 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) AT1G55490 1006 / 0 Cpn60beta1, LEN1, CPN60B LESION INITIATION 1, chaperonin-60beta1, chaperonin 60 beta (.1.2) AT5G56500 1002 / 0 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2) AT1G26230 742 / 0 Cpn60beta4 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) AT2G28000 500 / 1e-171 Cpn60alpha1, SLP, CH-CPN60A, CPN60A SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) AT3G23990 470 / 4e-160 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) AT2G33210 468 / 7e-159 HSP60-2 heat shock protein 60-2 (.1.2) AT5G18820 434 / 5e-146 Cpn60alpha2, EMB3007 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) AT3G13860 434 / 5e-146 HSP60-3A heat shock protein 60-3A (.1) AT5G20890 62 / 6e-10 TCP-1/cpn60 chaperonin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G222400 [exp] 1157 / 0 AT3G13470 1033 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.010G135100 [exp] 748 / 0 AT1G26230 813 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Potri.004G213400 [exp] 529 / 0 AT2G28000 964 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.009G009300 [exp] 518 / 1e-178 AT2G28000 919 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.002G252900 [exp] 481 / 2e-164 AT3G23990 995 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.003G173900 [exp] 480 / 6e-164 AT3G23990 1016 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.001G054400 [exp] 478 / 3e-163 AT3G23990 1018 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.015G122800 [exp] 474 / 2e-161 AT5G18820 821 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Potri.003G039475 [exp] 380 / 1e-124 AT3G13860 810 / 0.0 heat shock protein 60-3A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010321 [exp] 1063 / 0 AT3G13470 1041 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10013404 [exp] 1058 / 0 AT3G13470 1037 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10030917 [exp] 714 / 0 AT1G26230 863 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Lus10037386 [exp] 496 / 1e-169 AT2G28000 960 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10011902 [exp] 481 / 2e-164 AT3G23990 964 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011898 [exp] 479 / 2e-163 AT3G23990 987 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10022832 [exp] 479 / 3e-163 AT3G23990 980 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011770 [exp] 466 / 7e-157 AT3G23990 994 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10041329 [exp] 448 / 1e-151 AT2G28000 845 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10038352 [exp] 446 / 3e-150 AT5G18820 767 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [poplar] [flax] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Potri.001G002500.1 pacid=42789518 polypeptide=Potri.001G002500.1.p locus=Potri.001G002500 ID=Potri.001G002500.1.v4.1 annot-version=v4.1 ATGGCATCAACGTTTACTGCCATGTCCTCAGCTGGAACCTTGGCTGCTCCTAATGCCCGTGCCCTGGATAAGAAGTTTGCATTTTCTTCAAACAAGTTGT CATCTTTTGCTTCCATTTCTGCAAGTCGATTTGGTAGACCACAGAATGTAGTTCTACCAAGATCGCGTTCTCTCAAGGTTAATGCGGCCAAGGAGCTTCA TTTCAACAAGGACGGGTCAGCAATTAGGAAATTGCAAACTGGTGTGAACAAGCTTGCAGATCTAGTTGGGGTTACCCTTGGACCTAAAGGCCGGAATGTT GTTCTTGAGAGCAAGTACGGTTCACCTAAAATTGTCAATGATGGTGTGACTGTTGCTAAAGAGGTTGAATTGGAGGATCCAGTTGAGAACATTGGTGCTA AGCTAGTGAGACAAGCTGCTGCCAAGACAAATGACTTGGCTGGTGATGGGACCACAACATCTGTTGTTCTTGCACAGGGCCTAATTGCAGAAGGTGTCAA GGTTGTGGCGGCTGGTGCAAACCCTGTTTTAATCACTAGAGGCATTGAAAAGACCACAAGAGCTCTTGTAAATGAACTTAAATTGATGTCAAAAGAGGTT GAAGACAGTGAACTTGCAGATGTGGCCGCTGTTAGTGCAGGGAACAACTATGAAGTTGGGAATATGATTGCGGAAGCTATGAGCAAAGTTGGTAGGAAGG GAGTGGTGACTCTTGAAGAGGGAAAAAGCGCTGATAATAGTCTCTATGTCGTTGAGGGAATGCAGTTTGACCGTGGTTATATCTCACCTTACTTCGTCAC TGATAGTGAAAAAATGGCTGTTGAATATGATAACTGCAAGTTGCTTCTTGTTGACAAGAAAATAACAAATGCTAGAGATCTCATTGCCATTTTGGAAGAT GCAATTAAAGGTGGATATCCAGTTGTAATAGTTGCTGAAGACATTGAGCAAGAAGCTTTAGCTACTCTTGTTGTCAATAAGCTTAGGGGTGCTTTGAAGA TTGCTGCCCTCAAAGCTCCTGGTTTTGGGGAGCGGAAGAGCCAGTACCTTGATGACATAGCTATTCTGACTGGAGGAACTGTTGTTAGAGAAGAGGTGGG GCTTGCCTTGGACAAAGTAGGCAGTGAGGTCCTGGGACATGCTTCTAAAGTGGTTCTTACCAAGGATACAACCACCATTGTTGCTGATGGAAGCACCCAA GAAGCAGTAAATAAGAGAGTTGCACAGATTAAAAATCTTATTGAGGCTGCTGAACAAGACTATGAAAAGGAGAAGCTCAATGAAAGAATTGCAAAACTGT CAGGTGGTGTTGCAGTGATACAGGTTGGAGCACAAACCGAAACAGAGCTTAAAGAAAAGAAACTGAGAGTTGAAGATGCTCTAAATGCAACCAAGGCTGC CGTTGAGGAAGGTATTGTGGTTGGTGGTGGATGCACCCTGCTGAGACTGGCATCAAAGGTGGATGCCATCAAGGACAGCCTTGAGAATGATGAAGAAAAG GTCGGAGCAGACATTGTAAAGAGAGCTCTGAGCTACCCCTTGAAATTAATAGCCAAGAATGCTGGTGTTAATGGGAGTGTGGTCAGCGAGAAGGTGCTCG CAAGTGACAATCCTAAGTTTGGATACAATGCTGCAACTGGAAATTATGAAGATCTGATGGCTGCTGGAATCATCGATCCAACGAAGGTGGTCAGATGTTG CCTGGAGCATGCATCATCCGTAGCAAAGACTTTCTTGATGTCAGATTGTGTAGTTGTTGAGATTAAGGAGCCCGAATCAGTGCCTGCTGGCAACCCCATG GACAACTCAGGATATGGGTATTAA
AA sequence Show only first row Show all	>Potri.001G002500.1 pacid=42789518 polypeptide=Potri.001G002500.1.p locus=Potri.001G002500 ID=Potri.001G002500.1.v4.1 annot-version=v4.1 MASTFTAMSSAGTLAAPNARALDKKFAFSSNKLSSFASISASRFGRPQNVVLPRSRSLKVNAAKELHFNKDGSAIRKLQTGVNKLADLVGVTLGPKGRNV VLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTRALVNELKLMSKEV EDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSADNSLYVVEGMQFDRGYISPYFVTDSEKMAVEYDNCKLLLVDKKITNARDLIAILED AIKGGYPVVIVAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVVREEVGLALDKVGSEVLGHASKVVLTKDTTTIVADGSTQ EAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDSLENDEEK VGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLASDNPKFGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPESVPAGNPM DNSGYGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Potri.001G002500 [exp]	0	1
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Potri.003G006300 [exp]	1.73	0.9374	HSC70.2
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Potri.009G009300 [exp]	2.00	0.9363	SLP.1
AT3G60210			GroES-like family protein (.1)		Potri.014G044300 [exp]	4.47	0.8944	CPN10.4
AT4G33350		AtTic22-IV	translocon at the inner envelo...		Potri.002G126800 [exp]	6.32	0.9122
AT2G43630			unknown protein		Potri.006G123800 [exp]	6.70	0.8904
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Potri.018G063200 [exp]	8.48	0.9254	Pt-CPN21.2
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Potri.004G224400 [exp]	12.36	0.8754	Pt-HSC70.1
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Potri.004G213400 [exp]	17.43	0.8612	SLP.2
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Potri.004G002900 [exp]	19.36	0.8678
AT1G02020			nitroreductase family protein ...		Potri.002G146100 [exp]	19.74	0.8604

Compare expression of checked genes

Potri.001G002500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.