Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56510 545 / 0 APUM12 pumilio 12 (.1) AT1G78160 382 / 1e-122 APUM7 pumilio 7 (.1) AT1G22240 374 / 1e-121 APUM8 pumilio 8 (.1) AT4G08840 338 / 5e-107 APUM11 pumilio 11 (.1) AT1G35730 320 / 5e-100 APUM9 pumilio 9 (.1) AT1G35750 293 / 3e-90 APUM10 pumilio 10 (.1) AT3G20250 204 / 4e-55 APUM5 pumilio 5 (.1) AT3G10360 200 / 1e-53 APUM4 pumilio 4 (.1) AT4G25880 193 / 1e-51 APUM6 pumilio 6 (.1.2.3) AT2G29190 184 / 2e-48 APUM2 pumilio 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G222300 [exp] 1334 / 0 AT5G56510 497 / 4e-168 pumilio 12 (.1) Potri.002G095400 [exp] 378 / 4e-120 AT1G78160 473 / 8e-158 pumilio 7 (.1) Potri.002G120900 [exp] 315 / 5e-99 AT5G56510 278 / 2e-86 pumilio 12 (.1) Potri.014G020300 [exp] 288 / 9e-89 AT5G56510 260 / 1e-79 pumilio 12 (.1) Potri.001G298000 [exp] 233 / 6e-67 AT5G56510 211 / 2e-60 pumilio 12 (.1) Potri.008G004300 [exp] 214 / 3e-58 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.010G225600 [exp] 206 / 2e-55 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.008G036500 [exp] 204 / 6e-55 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.003G009900 [exp] 201 / 5e-54 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036469 [exp] 353 / 2e-113 AT1G78160 441 / 5e-149 pumilio 7 (.1) Lus10041139 [exp] 355 / 6e-113 AT1G78160 437 / 4e-146 pumilio 7 (.1) Lus10024793 [exp] 300 / 2e-92 AT5G56510 283 / 1e-87 pumilio 12 (.1) Lus10018710 [exp] 298 / 1e-91 AT5G56510 281 / 3e-87 pumilio 12 (.1) Lus10034808 [exp] 210 / 7e-57 AT3G20250 880 / 0.0 pumilio 5 (.1) Lus10033353 [exp] 208 / 2e-56 AT3G20250 732 / 0.0 pumilio 5 (.1) Lus10037976 [exp] 206 / 1e-55 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10038706 [exp] 200 / 2e-53 AT3G10360 928 / 0.0 pumilio 4 (.1) Lus10000516 [exp] 177 / 5e-49 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10002708 [exp] 182 / 1e-47 AT2G29200 1009 / 0.0 pumilio 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00806 [poplar] [flax] PUF Pumilio-family RNA binding repeat
Representative CDS sequence Show only first row Show all	>Potri.001G002600.3 pacid=42788162 polypeptide=Potri.001G002600.3.p locus=Potri.001G002600 ID=Potri.001G002600.3.v4.1 annot-version=v4.1 ATGGAAGATCAAAGAACTGAACTAGAGTTTGATGAATTTGAGAAGCTTCTTGGAGAGATACCGAATGCTACTTCTGGAAATCAGCATTCTGCTGATGCTG GACCTAAAAGTGCACCTCTAAATGGTAGCTGGGCACCCGTTTCTGTGAATTCCTTCAAGGGGCCTTTTATTGAGAAACTTGAAAGCAATGGGAGTTTGGA TGACAGACAAATTTTAGCAAATAAAACTCAACAATCTCCTACCACGAATGCTCAGTCAGAGGAAGCAAATTTGCCAGATGACCAATCCCTAACGTTAGCA TTTGCAGAATTGAGTTTTAATAGTGGGAGTCCTTTGGCAAATTATAAATCCTTACCCAACCCTTCTGTATACACAAACACCATGAATAGTTCACTCTCCA ATACAGATTCATCAACGATGGCTGCCCCTCCGTACCAATCACCAAATAATTTACCTTCTGGTTTTGACAAGTTTAATGCTGTGAAAGTTTGCCATGAACA GTCAAATTTCATAAAATTTGATGCCCGAGAACAGAAGAAGGTGCCAACTGATTTTTGTCAGCCTCATCAAATCAAAAAATTCTCCACAGCCTTGCCACCA ACTCATGGCATGCAAGGTTTTCAATTGCTTTCCAATATGGCTGTCCCAGGCATGGATTTTCCTTTAATGTCTGATCATCAACAATACTTAACTGATGTTC AGTCATCACTTCCTTACATACATTCACAACAGCTAAACCGGTCTCACATCAACTGGAGGAATATTGAAGAAGAACAATGCTACAGGATGCATCAGCAATG CTTATATCTGCAGCAACTCCGGAATCAAAGGTTGGAAGCTCAGAATCCTACTTCAGCAAATGGAAATGTTGAAACCAAGCTGATGAGTCGGAATGTGAGG CAACCTTATTTGGAGGTTCCATTCTCCCACCAACTTCAACAATCTAATCAAGAAACATTTTGGAGTAACTATGCTGTCACAAGGGGTTTGAACCAATCAC AGAATGGTATACGCGTTTTAGACAAAGTAGGAAAACAGAGTTTTCCTGAAAAGATTCTGACAAGGTCACAAGGACTGAACACACTGAAAGCTTTGAAGTT TGGCTCCGTTGGAGGCAATGAATCACTTGCCCATCTCAACCATAATGGGAAACTTCTATCAAATGCTCACCTTTTCCATAGCTTATCTACTCCTACTGCT GGGTGCTTTCAGTTAGATCCTTTGAGCTCATGGAATTTGTCCCCTGATTTTACAGTCCTAAAGAGTACTAATCTCAGGGCTCAGCCTCCGAAGTATAACT CAGTAGATGAAGTGACTGGTAGAATATATCTTATGGCAAAGGATCAGCATGGCTGTCGCTTCTTGCAAAGAACATTTTCTGAGGGGACCCCACAAGATGT CGAAAAGATTTTTCTTGAGATTATTGATCACATCGTTGAGCTAATGACAGACCCTTTTGGGAATTACCTTGTTCAGAAGTTGCTTGAAGTATGCAATGAG GATCAGAGAATGCAAATACTACGTACTATCACTAGGAAAGCTGGGGAGCTTGTTCGGATTTCATGTGATATGCATGGGACTCGAGCTGTTCAAAAGGTAA TCGAAACCCTTAAGACTCCAGAGCAGTTTTCCATGGTTGTCTCTGCATTGAAGCCTTGTATAGTGACTCTGATAAAAAATATGAATGGTAACCATGTAGC CCAGCGCTGCTTGCAGTATTTGATGCCTGAATACAGTGAGTTCCTTTTTGAAGCTACAACTGCTAATTGTGTTGAACTTGCAACTGACCGTCATGGCTGT TGTGTACTTCAAAAATGCCTAAGCCAATCTAAGGGAGAGCAAAGACGATGTTTAGTCTCTGAGATCACATCAAATGCTCTAATCCTTTCGCAAGATCCAT TCGGTAACTATGTTGTGCAATTTGTCTTTGAGCTTCGTCTTCCATGGGCAGCAACTGATATTCTTGATCAGTTGGAGGGTAATTATGGAGACTTGTCTGT TCAGAAATATAGCAGCAATGTGGTCGAGAAATGCCTAAAATATGCAGGTGAGGTGCGCCGCACTCGTATCATTCGGGAGCTGATAAATAATTCTCGCTTG GATCAAGTCATGCAAGATCCTTTTGGTAATTATGTTATCCAGGCAGCTTTGCAACAATCAAAGGGAGCTCTTCATGCTGCTTTGGTGGAGGCTATACGAC CCCATGTTCCTACTCTTCAAACTAGTCCTTATGGGAAGAAAGTCCTATCTAGTAATATTTTGAAAAAGTAA
AA sequence Show only first row Show all	>Potri.001G002600.3 pacid=42788162 polypeptide=Potri.001G002600.3.p locus=Potri.001G002600 ID=Potri.001G002600.3.v4.1 annot-version=v4.1 MEDQRTELEFDEFEKLLGEIPNATSGNQHSADAGPKSAPLNGSWAPVSVNSFKGPFIEKLESNGSLDDRQILANKTQQSPTTNAQSEEANLPDDQSLTLA FAELSFNSGSPLANYKSLPNPSVYTNTMNSSLSNTDSSTMAAPPYQSPNNLPSGFDKFNAVKVCHEQSNFIKFDAREQKKVPTDFCQPHQIKKFSTALPP THGMQGFQLLSNMAVPGMDFPLMSDHQQYLTDVQSSLPYIHSQQLNRSHINWRNIEEEQCYRMHQQCLYLQQLRNQRLEAQNPTSANGNVETKLMSRNVR QPYLEVPFSHQLQQSNQETFWSNYAVTRGLNQSQNGIRVLDKVGKQSFPEKILTRSQGLNTLKALKFGSVGGNESLAHLNHNGKLLSNAHLFHSLSTPTA GCFQLDPLSSWNLSPDFTVLKSTNLRAQPPKYNSVDEVTGRIYLMAKDQHGCRFLQRTFSEGTPQDVEKIFLEIIDHIVELMTDPFGNYLVQKLLEVCNE DQRMQILRTITRKAGELVRISCDMHGTRAVQKVIETLKTPEQFSMVVSALKPCIVTLIKNMNGNHVAQRCLQYLMPEYSEFLFEATTANCVELATDRHGC CVLQKCLSQSKGEQRRCLVSEITSNALILSQDPFGNYVVQFVFELRLPWAATDILDQLEGNYGDLSVQKYSSNVVEKCLKYAGEVRRTRIIRELINNSRL DQVMQDPFGNYVIQAALQQSKGALHAALVEAIRPHVPTLQTSPYGKKVLSSNILKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56510		APUM12	pumilio 12 (.1)		Potri.001G002600 [exp]	0	1
AT3G24040			Core-2/I-branching beta-1,6-N-...		Potri.001G053800 [exp]	1.41	0.9044
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.018G065900 [exp]	1.73	0.8897
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Potri.006G096100 [exp]	5.29	0.8871	DEX1.1
AT5G62580			ARM repeat superfamily protein...		Potri.012G074400 [exp]	7.07	0.8667
AT5G13390		NEF1	no exine formation 1 (.1)		Potri.001G068900 [exp]	7.41	0.8526
AT1G77260			S-adenosyl-L-methionine-depend...		Potri.002G077100 [exp]	8.94	0.8863
AT5G56510		APUM12	pumilio 12 (.1)		Potri.003G222300 [exp]	11.13	0.8894
AT4G38270		GAUT3	galacturonosyltransferase 3 (....		Potri.004G206000 [exp]	12.48	0.8592
AT4G19180			GDA1/CD39 nucleoside phosphata...		Potri.004G236900 [exp]	12.72	0.8709
AT2G29400		PP1-AT, TOPP1	type one protein phosphatase 1...		Potri.001G245700 [exp]	16.12	0.8694	TOPP1.2

Compare expression of checked genes

Potri.001G002600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.