Plant FIBer expression Database

Potri.001G002700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G55480 303 / 1e-101 ZKT protein containing PDZ domain, a K-box domain, and a TPR region (.1)
AT1G02910 44 / 0.0001 LPA1 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G222200
[exp]
369 / 4e-127 AT1G55480 405 / 4e-142 protein containing PDZ domain, a K-box domain, and a TPR region (.1)
Potri.002G206300
[exp]
45 / 7e-05 AT1G02910 615 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010322
[exp]
301 / 7e-101 AT1G55480 401 / 1e-140 protein containing PDZ domain, a K-box domain, and a TPR region (.1)
Lus10013403
[exp]
296 / 2e-98 AT1G55480 395 / 3e-138 protein containing PDZ domain, a K-box domain, and a TPR region (.1)
Lus10010280
[exp]
43 / 0.0004 AT1G02910 610 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1)
Lus10036345
[exp]
43 / 0.0004 AT1G02910 620 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1)
PFAM info
Representative CDS sequence
>Potri.001G002700.2 pacid=42791221 polypeptide=Potri.001G002700.2.p locus=Potri.001G002700 ID=Potri.001G002700.2.v4.1 annot-version=v4.1
ATGTGTTCTCGTAATGAAGCTTTATTCACGCAATCTGATTACAGCAGTGTACGTATATGGAGATTTCAGCCGCTCCATTTACAGCTAGCAGGGATGCTGA
AACAGATGTTGGGTGAAATTGGAAGAACATGGAGTAGTGAAGGATCTTGGAGAAGACGTCATGTGATTAATGCAGGATCATTCATCTTTGTACCGATTAT
AGAATGGAAGAGCAGAGCATGCATTTTGATGCCAAGCAGTGATGACAAATCTGTGCAAATCCCACTTCTTTTCTCTCAGAACACTCACTTTTTATCCAAG
AACTACTCATTTTCCAGCACTTCAACAACTTTCAGCAATACCCTTTTGCTAAAACCATCAAATTCAACCCTTAAAGCATCGGAAACTGAGTCCCAGACAT
CAAAACCTGCAGAGAGTAATGAAAATGAAGGAGAAGGAAAAGAAAAGTACGAAGAATATGAGGTGGAAATAGAGCAATCTTATGGACTGAAGTTTGCAAA
GGGTAGAGATGGTGCTACTTACATTGATGCTATTGCTCCTGGTGGATCAGCTGATAAGACTGGCAAGTTCAGCGTTGGTGATAAAATTTGGCCAGCTTCT
GAATATGGAAGGACAATGTACACCATCCGCCAAAGAATTGGCCCATTACTCATGAAAATGCAAAAAGATATACGATCTGAGAGGAACTTTGGTGTCATTA
GTAACAGGGTGAGAGAAATCCAAATACAAAATTACTTCAGAAAAAAGGAGCAGAAAGAACAAAGAGAAAAGGATCTTCAAATTGCCAAATATGAGGAAGC
ACTGGAGAAGTTCGAGTCTGTATTGGGATCAAAACCAGACCTCACTGAAGCTTCAGTGGCAAGTTACTATGTTGCTTGTTGTTATTTGAAACTTAATCAG
TTACAATCTGGGCTATCTGCACTTGAAGATGCATTGGAAGCAGTATTTGAAGACTTTAAGAGAATCCGGGCAGATCCTGACCTGGAAAATTTAAGGACAT
CTGAGGAATTCGAACCTCTTATGAAAAGGTTTGATGAATCTTTTATCAACGAGAATGCCATCAACGTCATTAAATCTCTATTTGGATTCAACAAGAAATA
G
AA sequence
>Potri.001G002700.2 pacid=42791221 polypeptide=Potri.001G002700.2.p locus=Potri.001G002700 ID=Potri.001G002700.2.v4.1 annot-version=v4.1
MCSRNEALFTQSDYSSVRIWRFQPLHLQLAGMLKQMLGEIGRTWSSEGSWRRRHVINAGSFIFVPIIEWKSRACILMPSSDDKSVQIPLLFSQNTHFLSK
NYSFSSTSTTFSNTLLLKPSNSTLKASETESQTSKPAESNENEGEGKEKYEEYEVEIEQSYGLKFAKGRDGATYIDAIAPGGSADKTGKFSVGDKIWPAS
EYGRTMYTIRQRIGPLLMKMQKDIRSERNFGVISNRVREIQIQNYFRKKEQKEQREKDLQIAKYEEALEKFESVLGSKPDLTEASVASYYVACCYLKLNQ
LQSGLSALEDALEAVFEDFKRIRADPDLENLRTSEEFEPLMKRFDESFINENAINVIKSLFGFNKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G55480 ZKT protein containing PDZ domain,... Potri.001G002700
[exp]
0 1
AT5G13950 unknown protein Potri.014G144100
[exp]
9.43 0.8126
AT2G42040 unknown protein Potri.016G058100
[exp]
12.60 0.7826
AT4G34200 EDA9 embryo sac development arrest ... Potri.002G122700
[exp]
16.24 0.7353
AT1G54570 Esterase/lipase/thioesterase f... Potri.005G046600
[exp]
16.43 0.7497
AT1G10790 unknown protein Potri.001G210600
[exp]
16.79 0.7691
AT1G70940 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxi... Potri.010G112800
[exp]
19.44 0.7011 PIN3.1,PIN3
AT4G13040 AP2_ERF Integrase-type DNA-binding sup... Potri.002G246100
[exp]
29.39 0.7504
Potri.010G030750
[exp]
29.49 0.7093
AT5G66810 unknown protein Potri.005G137100
[exp]
40.41 0.7171
AT3G02380 CO ATCOL2, COL2 CONSTANS-like 2 (.1) Potri.004G108320
[exp]
45.59 0.7623

Potri.001G002700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.