Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36110 389 / 2e-131 CYP716A1 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) AT2G42850 259 / 9e-81 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT3G19270 224 / 9e-68 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT5G45340 224 / 1e-67 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 218 / 4e-65 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G36140 204 / 7e-62 CYP716A2 "cytochrome P450, family 716, subfamily A, polypeptide 2", cytochrome P450, family 716, subfamily A, polypeptide 2 (.1) AT1G12740 203 / 9e-60 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT2G29090 201 / 7e-59 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT5G36130 190 / 7e-59 Cytochrome P450 superfamily protein (.1) AT5G05690 187 / 9e-54 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G002800 [exp] 791 / 0 AT5G36110 415 / 1e-141 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.001G003100 [exp] 710 / 0 AT5G36110 424 / 2e-145 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.006G085500 [exp] 487 / 1e-169 AT5G36110 573 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.018G149300 [exp] 476 / 2e-165 AT5G36110 585 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.007G002400 [exp] 469 / 2e-162 AT5G36110 585 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.018G134000 [exp] 460 / 3e-159 AT5G36110 559 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.018G133901 [exp] 454 / 6e-157 AT5G36110 526 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.013G106200 [exp] 430 / 4e-147 AT5G36110 492 / 2e-171 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.013G106100 [exp] 426 / 9e-146 AT5G36110 470 / 4e-163 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040055 [exp] 286 / 4e-91 AT5G36110 318 / 7e-104 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Lus10010940 [exp] 266 / 3e-83 AT2G42850 571 / 0.0 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) Lus10035685 [exp] 223 / 2e-67 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10021725 [exp] 212 / 3e-63 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10042652 [exp] 206 / 1e-60 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10019858 [exp] 206 / 3e-60 AT3G19270 643 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10033105 [exp] 205 / 4e-60 AT1G05160 305 / 2e-98 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10033308 [exp] 205 / 4e-60 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10040193 [exp] 202 / 3e-59 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10034768 [exp] 202 / 5e-59 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.001G003000.1 pacid=42792892 polypeptide=Potri.001G003000.1.p locus=Potri.001G003000 ID=Potri.001G003000.1.v4.1 annot-version=v4.1 ATGTTTTCAAGTCCGGATCATGATAGTATTATGATTCTGGTTGCAGCCCCTTGTCTTCTTCTACTATATTTTTTAATCAAAACACTCAGAGAGAGATTGT TTCCAGACCCTCAACTTCCACCAGGAAGTCTAGGATGGCCTCTCCTTGGTGAGACTTTACAGTTCTTGCCAACACGTCGCACACCAAAACCTGAGAGATT TGTAAGCGATAGAATGAAGAAATACAATCCTCAGGTTTTCAAGACTTCACTGTTTGGAGAAACAGTGGCTGTGTTTTGTGGACCAGCTGGGAACAAGTTC TTGTTCCAAAATGAGAACAAGCTGGTCAATCTTTGGTGGCCAACTTCAGTGAAGAAGCTGATGAAATCAAGCTTGTCTAATGTAGTGGGTGACGACGCTA AGAGGATGAGGAAGATGCTCTTAACTTCCCTTGATCGAGATGCGCTCAAGAGGTACATAGACAGGATGGATTTGGTCGCACAAAACCATATTAGGACACA CTGGGAAGGAAAAGAGGAGCTGAAACTGCATCCAACTATCAATTTATACACATTTGAGCTGTCTTGTCGCCTTTTTGCAAGCATTGATGACCCTACACAC ATTTCCAAGCTTGCACACCATTTTGACATCTTTCTCAAAGGAGTCATTCACTTTCCTATCTATGTACCTGGCACGCCATTTTACCGTGCTTCCAAAGCTG CTGATGCAATCAAGGAAGAGCTTCGGTTGATTGCTAGACGAAGAAGAGAAGCTCTGGACAAGAAGATGGAATCGCACAGAAAAGATCTTCTGTCACATTT GCTTGTGACTACAGACGCAAGCGGAAAGTTACTATCCGAGTCCGAGATTGTTGACAACATGCTGATGTTGCTCTTTGCTAGTCATGACACTACTACATCA GCCATGACATGTGTAATGAAGTATCTAGCAGAATTGCCTGAAGTGTACGAAATGGTTTTGAGAGAGCAGCTTGATATTGCTAAGTCTAAAGAAGCAGGAG AGTTGTTGAAATGGGAGGATATTCAGAGAATGAGATACTCATGCAATGTGGTCTCCGAAGTTCTGAGGATGATACCGCCTATACGTGGTACTTTCAGAAA GGCATTGGTTGACTTCACCTATGCAGGTTATAAAATCCCAAAAGGATGGAAGCTATACTGGAGTCCTGACTCGACAACTAAAGACCCAGCTTACTTCCCA AATCCAGAAGAGTTTGATCCTTCCAGGTATGAAGGAGCGGGGCCTGCCCCGTATACCTTTGTTCCATTCGGAGGGGGTGGGAGGGTTTGCATAGGGAATG AATACTCTAGACCGCAAATACTCGTGTTCATGCATAACATCGTGAAGAGATTCAAATGGGATTTACTGATTCCTGATGAGAAAGTTACATATGATCCCAT GCCTGCACCATCACATGGTCTTCCGATTCGTATTCAGCAGCACCAATCCACAGCCTAA
AA sequence Show only first row Show all	>Potri.001G003000.1 pacid=42792892 polypeptide=Potri.001G003000.1.p locus=Potri.001G003000 ID=Potri.001G003000.1.v4.1 annot-version=v4.1 MFSSPDHDSIMILVAAPCLLLLYFLIKTLRERLFPDPQLPPGSLGWPLLGETLQFLPTRRTPKPERFVSDRMKKYNPQVFKTSLFGETVAVFCGPAGNKF LFQNENKLVNLWWPTSVKKLMKSSLSNVVGDDAKRMRKMLLTSLDRDALKRYIDRMDLVAQNHIRTHWEGKEELKLHPTINLYTFELSCRLFASIDDPTH ISKLAHHFDIFLKGVIHFPIYVPGTPFYRASKAADAIKEELRLIARRRREALDKKMESHRKDLLSHLLVTTDASGKLLSESEIVDNMLMLLFASHDTTTS AMTCVMKYLAELPEVYEMVLREQLDIAKSKEAGELLKWEDIQRMRYSCNVVSEVLRMIPPIRGTFRKALVDFTYAGYKIPKGWKLYWSPDSTTKDPAYFP NPEEFDPSRYEGAGPAPYTFVPFGGGGRVCIGNEYSRPQILVFMHNIVKRFKWDLLIPDEKVTYDPMPAPSHGLPIRIQQHQSTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G003000 [exp]	0	1
AT3G10720			Plant invertase/pectin methyle...		Potri.010G247700 [exp]	3.31	0.8881
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G284200 [exp]	7.54	0.8973
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.006G037000 [exp]	9.48	0.8919	PIN8,Pt-PIN2.2
AT4G04745			unknown protein		Potri.004G016800 [exp]	9.89	0.9195
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.006G254600 [exp]	13.82	0.8156
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Potri.015G013100 [exp]	14.69	0.8771
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Potri.017G019900 [exp]	16.12	0.8883
					Potri.003G204475 [exp]	16.49	0.8315
AT3G14470			NB-ARC domain-containing disea...		Potri.004G196100 [exp]	16.61	0.9078
AT2G38870			Serine protease inhibitor, pot...		Potri.016G078900 [exp]	17.72	0.8264

Compare expression of checked genes

Potri.001G003000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.