Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04220 637 / 0 AtRLP46 receptor like protein 46 (.1) AT4G08850 310 / 1e-91 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G71400 297 / 3e-88 AtRLP12 receptor like protein 12 (.1) AT3G05660 294 / 7e-87 AtRLP33 receptor like protein 33 (.1) AT5G25910 285 / 5e-84 AtRLP52 receptor like protein 52 (.1) AT1G35710 290 / 8e-84 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G46330 288 / 5e-83 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 278 / 1e-79 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G71390 272 / 1e-79 AtRLP11 receptor like protein 11 (.1) AT3G05650 273 / 2e-79 AtRLP32 receptor like protein 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G027600 [exp] 320 / 2e-94 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.010G107000 [exp] 312 / 2e-92 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.012G009200 [exp] 306 / 3e-90 AT1G45616 386 / 7e-118 receptor like protein 6 (.1) Potri.010G106900 [exp] 305 / 5e-90 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 300 / 5e-88 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.011G104600 [exp] 301 / 1e-87 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2) Potri.001G389100 [exp] 288 / 6e-84 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.016G126900 [exp] 286 / 4e-83 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.012G088900 [exp] 284 / 2e-82 AT4G20140 700 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023323 [exp] 297 / 4e-86 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10019035 [exp] 293 / 2e-85 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 287 / 3e-83 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 285 / 3e-82 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 281 / 4e-81 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10006948 [exp] 276 / 8e-81 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10024737 [exp] 276 / 5e-80 AT2G34930 920 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10027688 [exp] 276 / 2e-79 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10008849 [exp] 275 / 1e-78 AT1G73080 648 / 0.0 PEP1 receptor 1 (.1) Lus10016384 [exp] 272 / 6e-78 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G003200.1 pacid=42791322 polypeptide=Potri.001G003200.1.p locus=Potri.001G003200 ID=Potri.001G003200.1.v4.1 annot-version=v4.1 ATGGCTGAACTTAGATTACTACTATTTTCCCTCTCCATCCTCTTCTCCACTTCCTTGTGCTGTCCAGATGATCAGAAACTAGCCCTTCTCCACTTCAAAT CCTCCCTCTTGGACAGTATTAACTCTTCTACACAATATTCCCTCTCCAGCCTGGATTCGTGGGATGATAGCTCAGATTGTTGCCACTGGGATATGGTCAC TTGTAGTTCTCGGTCAAATTCTAGAAAAGTAGTTGCCCTCCACCTTGACTCTCTGGTTTTAGCAGAGCAACCCATACCAATTCCTTCCATGGTTTTATCT CCTCTCTCTCTCATCAAAAGCTTGATGCTGCTTGATATATCCTCAAATTATATCGTAGGTGAGATCCCACCCGGTGTGTTTTCCAATCTCAGCAAGCTGG TTCACCTCGACATGATGCAAAATAACTTCAGTGGATCCATTCCTCCACAGATTTTCCATTTGAGGTATCTACAGTATCTTGATATGAGTAGCAATTTACT AAAGGGGGTTATAAGCAAAGAAGTGGGCTCTCTTCTCAACTTGAGAGTATTGAAGTTGGATGATAATTCTCTGGGGGGGTATATTCCTGAAGAGATTGGA AACCTTACGAAGTTACAGCAGTTGAATCTTCGCAGCAACAATTTCTTTGGTATGATTCCATCTTCAGTTCTCTTCCTGAAGGAGCTGGAAATATTGGAAT TGAGGGACAATTCTTTATCCGTGGAGATTCCTAAAGATATTGGTGATTTAACCAACCTGACCACTCTGGCCTTGAGCGGTAACAGGCTGACTGGTGGAAT CACATCATCCATACAGAAGCTTCACAAGTTAGAAACACTCAGATTGGAAAACAACGTACTATCTGGAGGAATTCCAACTTGGTTGTTTGACATCAAAAGT CTGAAGGATCTGTTTCTTGGAGGGAATAATCTGACTTGGAATAACACTGTAAACTTGGAGCCCAAGTGTATGCTAGCTCAGTTATCTCTGAGTTCATGCC GTCTCGCGGGGAGAATCCCAGACTGGATTTCTACACAGAAGGATCTTGTTTTCCTGGATTTAAGCAGGAATAAGCTAGAAGGACCATTCCCGGAATGGGT TGCTGAAATGGACATAGGCAGCATATTTCTGTCAGACAATAATCTTACAGGTTCACTTCCACCTCGTCTCTTTCGGTCTGAAAGTTTGTCAGTCCTTGCC TTATCGAGGAATAGCTTCTCTGGAGAGTTGCCAAGTAACATTGGAGATGCCATTAAAGTCATGATTCTTGTGTTCTCCGGAAACAACTTTTCAGGGCAGA TTCCAAAGTCCATCTCGAAGATTTATCGCCTTCTTCTTTTGGATTTATCAGGAAACAGGTTTTCGGGGAACATTCCAGATTTTAGGCCCAATGCATTACT CGCTTACATCGATTTCTCTTATAATGAGTTCTCGGGTGAAATTCCAGTGATCTTTTCTCAAGAAACCAGGATACTTTCATTAGGAAATAACATGTTCTCT GGAAAACTACCCAGTGACCTGACAGATTTGAACAACCTTGAACACCTTGACCTCCATGACAACAGAATTGCAGGAGAACTGCCCATGTCTCTCTCTCAAA TGTCCACTCTTCAAGTCCTGAACTTACGTAACAACACCCTCGAAGGTTCAATCCCCAGCACCATAACCAACCTCACTAACCTCCGAATTCTAGATGTCTC AAGCAACAATCTCAGTGGCGAAATACCGGCCAAGTTGGGGGATCTGGTTGGAATGATAGATACACCCAATACTCTCAGATCAGTCTCAGATATGTTCACC TTCCCCATTGAGTTCAGTGACTTGATAGTTAATTGGAAGAAGTCGAAACAAGGTCTCTCAAGCCACAGCCTTGAAATCTACTCTTTGCTAGACTTGTCAA AGAACCAGCTTTCTGGCCAACTCCCAGCTTCATTAGGTCACCTAAAGGGTCTGAAGCTACTGAACATCTCATATAACCACCTCTCTGGCAAGATACCAGC AACTTTCGGCAATCTAGAGAGTCTAGAGAGCCTGGACTTGTCACGTAACAGACTATCCGGTTCCATTCCAAGAACACTATCAAAACTTCAAGAACTTACA ACTTTGGATGTAAGTAACAACAAACTCGAGGGTCAGATTCCAGTGGGTGGCCAAATGGACACGATGAATGATCCAAATTCATATGCCAACAACAGTGGGC TATGTGGTTTTCAAATTCTACTACCATGTCCACCAGACCCAGAGCAGCCACAAGTAAAGCAACCAGAAGCAGATGACTCATGGTTTTCATGGCAAGGTGC AGGGATTGGATATTCAGTAGGCTTTTTTGCAACAATAACAATCATACTTGTCTCTGGCTGTATAAGCAGGTTACCACCTCAAAATCGCCACCGATCACAC AGAAGGCAACGGGTTTAG
AA sequence Show only first row Show all	>Potri.001G003200.1 pacid=42791322 polypeptide=Potri.001G003200.1.p locus=Potri.001G003200 ID=Potri.001G003200.1.v4.1 annot-version=v4.1 MAELRLLLFSLSILFSTSLCCPDDQKLALLHFKSSLLDSINSSTQYSLSSLDSWDDSSDCCHWDMVTCSSRSNSRKVVALHLDSLVLAEQPIPIPSMVLS PLSLIKSLMLLDISSNYIVGEIPPGVFSNLSKLVHLDMMQNNFSGSIPPQIFHLRYLQYLDMSSNLLKGVISKEVGSLLNLRVLKLDDNSLGGYIPEEIG NLTKLQQLNLRSNNFFGMIPSSVLFLKELEILELRDNSLSVEIPKDIGDLTNLTTLALSGNRLTGGITSSIQKLHKLETLRLENNVLSGGIPTWLFDIKS LKDLFLGGNNLTWNNTVNLEPKCMLAQLSLSSCRLAGRIPDWISTQKDLVFLDLSRNKLEGPFPEWVAEMDIGSIFLSDNNLTGSLPPRLFRSESLSVLA LSRNSFSGELPSNIGDAIKVMILVFSGNNFSGQIPKSISKIYRLLLLDLSGNRFSGNIPDFRPNALLAYIDFSYNEFSGEIPVIFSQETRILSLGNNMFS GKLPSDLTDLNNLEHLDLHDNRIAGELPMSLSQMSTLQVLNLRNNTLEGSIPSTITNLTNLRILDVSSNNLSGEIPAKLGDLVGMIDTPNTLRSVSDMFT FPIEFSDLIVNWKKSKQGLSSHSLEIYSLLDLSKNQLSGQLPASLGHLKGLKLLNISYNHLSGKIPATFGNLESLESLDLSRNRLSGSIPRTLSKLQELT TLDVSNNKLEGQIPVGGQMDTMNDPNSYANNSGLCGFQILLPCPPDPEQPQVKQPEADDSWFSWQGAGIGYSVGFFATITIILVSGCISRLPPQNRHRSH RRQRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04220		AtRLP46	receptor like protein 46 (.1)		Potri.001G003200 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025800 [exp]	2.44	0.8444
AT2G23770			protein kinase family protein ...		Potri.008G160501 [exp]	3.60	0.7863
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.004G043500 [exp]	4.47	0.8349
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Potri.012G059600 [exp]	4.47	0.7960
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Potri.005G225800 [exp]	4.89	0.8208
					Potri.004G037750 [exp]	5.74	0.7929
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Potri.001G276600 [exp]	7.14	0.8292
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025500 [exp]	7.41	0.8110
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025601 [exp]	9.38	0.8019
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.009G133600 [exp]	9.89	0.8079

Compare expression of checked genes

Potri.001G003200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.