Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55325 2186 / 0 MAB2, GCT MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G220800 [exp] 3245 / 0 AT1G55325 2185 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035973 [exp] 2070 / 0 AT1G55325 1843 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10016683 [exp] 1408 / 0 AT1G55325 1302 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10016684 [exp] 862 / 0 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10035972 [exp] 327 / 7e-102 AT1G55325 313 / 5e-98 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06333 [poplar] [flax] Med13_C Mediator complex subunit 13 C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G004200.1 pacid=42788139 polypeptide=Potri.001G004200.1.p locus=Potri.001G004200 ID=Potri.001G004200.1.v4.1 annot-version=v4.1 ATGTGGACTAATGTATTCAAAATTGGTGGTCTTCATCATATATCATGGTTCCAGTTTCTCCCAAATGAATCTGATTTGAACTCTTTACCTGATAAGAGTG TGAAGGTAGAGCAGAAAGATGTGGCTACATGTCTCGTGATTTTGGCTCATTTGCAGTTGCAGAAAGAGGGATTTCTAAGCACTTGGACCAATTCCTTTGT TGGACCTTGGGATCCATCACAAGGTCTACATAATCCTGATGAGAAAATAAAGCTCTGGCTTTTTCTTCCTGGACGTTATTCATCTGTTGTTGAGAAGGCT CAAGCTGCAGTGTCTAGATTAAGAGTTGTTGCATCTGGAATTTGGGTTGCTCCTGGGGACTCTGAAGAGGTTGCAGCAGCCCTTTCTCAATCTTTGAGGA ATTACATAGAGAGAGCATTGGCCAGGCATTCATACATGCGGTTTGGAGATGTGTTTTTAAAGTACCATCCATCTCAAAGTGAAGGACTTTCCAGTAAAGG ACAGCCCACAGTCGAGTTCATCTTTTCTGCCTCTGAAGAGACGATCTTTGTGCACGTGATAATATCTGCAAAGCATATCCGAGCACTTTCAAATGGTGAT GTGGAAAGAGTGTTAAAACATTCTTCTACAAATTCCAGTTTTAGGCTTCCAGTGATTGCTTCTCCTCATGGAATTCGTGGTTCGCTGACAGGATGTTGTC CAAGTGATCTTGTCAAGCAAGTGTATTTGAGTTCTGGCAAGTTTAGGACATTAAATGGATATATTGGCCTGCCATATCATGTTTCTCAAGGACCTGGCTG TCAGCTGAGGGGGCAAAATTGCTATGTTGAAATTACACTAGGTTGCCCAAGGTCTGATAGTGACAAGGCATTGCAAACAAACTCACAGTCAACTAAGAAT TCATCCAAGAATTATATTGTAGAATCTATTGCAGCAAGGAGAGGTGATCAGAAGGTATCGCCAGATCACTTATCAGCTCATGAGAAAGCATTTATTTATC CTGCTGAAGCAGTTGTTGTTCCAGTCTTACAAAAATCTTTTGCTAGGTCTTCTTTGAAAAGATTTTGGCTGCAAAACTGGATAGGGCCATCACTACCTGG TTCATCATTCTTTATGCATTGTGGTGGTGATACAGATTTTCTGGAAGGATCTTGGATTGAATCTAATGGAGTACGTATGCAGCACGGATATAACAGCAGT AGCAATAGTAATAGTAGCAGCATCAGCTCCATAAGCAGCGGCTCTAGTGACAGTGATTACAAGATGACCACTGGTGAGCTTGAGGCTGATGCTGATTCAT TGTCATGCAGACAATCTGGTTTATCTTCCAATGATCAGATGGAAAATGATGGCCTCAAATTGGGTTCTAAGCGTCCTAGAACAGGGATGACTGAGCCATT TGGTCAAGCGGGCATGGTTAAAAATGTTCACATGCAAGATTTTGGTTCAGTAGAAGTTAATGATTCAGCTATCACAGGAATTGCAAATGATCAGATTGGA TCTCGTTGGGATTGGGACGATGACAGAGGTGCGGGCATGGATATCCAAGCTCTTCTCTCTGAATTTGGTGATTTTGGGGACTTCTTTGAGAATGATGATC TGCCTTTTGGAGAGCCTCCTGGAACAGCAGAGTCGCAGGCTCTTATGTTTTCTGGTCCTGATTGTGGTGAAGTTGCTAACAGTCCTATTGGGGTAATGGA TGTTGTGGATCAGATGCTTCCGCCAGTAGCTTTTCCATCTTTTGAAAGTTTTAATCCGTCTCCTGCAGTAGTCATAGATGAAAGTGCCAGCAAAAGCCAA GAAGACACACATGGTACTCTGGCATTAATTCCAGTGAACTGCACTCCATCATCTTCTTCAGGCGAGTTTGATCATTTAATCAAAGCCGAAGCTTTGATGA CCTTTGCCCCAGAATATGGGGCAGTTGAAACCCCTACAAGTGAATTCTCCTCATCGATTTTCAGGAGTCCATATTGTCCAAAATCTCGCCAAGTGGAGAG CTCAAATTCGAGTTCAAATAATTATGCATATGGTGCAACACCACCATCTTCTCCTTGCTTTGAAGGATCAAATGAGAAAACTGGCATACAGGTGAATCTG AAAACAGGTCCTGGAAGGAATGACACAAAGAAATATTACACTCTTGTGGAAGGTGGGAAAGTACCACTTGATAGAAGAACATTAACATCTAATGAAAGCC GTCCTACAAGTGAGGCGATGATGCCATCTCCATTATTGAATTCTAATTCATCAAATACTGTCAAATCTGCCCAGAGGAAAATGAGTGATGGCACACTAGG AGCAGAAAGTTTCTTAGTTTCTATGAAGACTGTTCTGGCAACTGAAGTAGAATGCATTATGTTTCAAGCTTCCATGTGTAGAATGCGACACACACTGTTG TCTCCTGGTAACCCTACATCTGTAAATTTGCATAGGTTAAGTGGAAGCACTGGTTTGAATCAGGTGCATGGTGATGCAAGTACCATGACAGACAACATAT CTGGCAGGCATGAAGTGAAGAAAAAAGAATCTATACCAGTTAGAATAGCTGGGGATATGGATGGTGGAGTACTAGATGGGCATCTTAGTTCACCTGTAGG TGTTTGGCGCTCTGTTGGAGTTCCTAAATTAACAAAACATACTAGTTCATCGAATATTGAAGTTAGTGTGTCCTTGCCACACCATTCATTCAGCGAGGAA GGAGTTCTCTCATATAGGCAAAGGCAGCAGCCACTGCAGGAGCTTTTGGATGGCATGGCATTGCTTGTCCAACAAGCTACTTCCTTTGTTGATGTGGCTC TGGATGCTGATTGTGGTGATGGTCCTTATGGTTGGCTTGCATTACAAGAACATTGGAGGCGTGGATTTTCTTGCGGGCCTTCCATGATCCATGCAGGTTG TGGAGGGACTTTGGCTTCTTGTCATTTTCTGGACATTGCTGGCGTGGAACTAGTAGACCCACTTTCTGCTGATATTCATTCTTCTGCAGTGACCACCTTG CTGCAGTCTGAAATCAAAATAGCCTTAAAATCTGCTTTTGGGAATTTGGAAGGTCCTTTATGTGTCACTGATTGGTGCAAAGGCCACATTCAGTCAGGTG ATGGAGCAACCACATGCGATGGATCCTCTGGGGAGTCCACTTTAAGTGAATGCAAAGATTCAAGTACTGTAACACTGTCTGTTGGAGAACCAATGAGCCC AGCCCTCTCTTCAGCTGCTGGATCATCTTCCCTCAAAGCATCCAGTACACCAGATGGAGCTAAAGTGGATGAGACATCCCAAAGGAAATCAAATCAAGAA ATAGAGCCAGAGCTACTTCCCAGGATAAAGCCAACAGTTTTTGTTCTTCCTTTGCCTGCAATTCTTGTTGGGTACCAGGATGATTGGCTTAAGACATCGG CAAGCTCTTTACAACTCTGGGAAAAGGCTCCTTTTGAACCATATGCTTCACCAAAACCAATAACTTATTGTGTTGTATGTCCAGACATTGATCCCCTTAC TTCTGCAGCTGCAGATTTTTTCCAACAACTTGGAACTGTCTATGAAACGTGCAAACTGGGAACTCATTCACCTCAGAGTTTGGGAAACCAAATGGAGATG GATGCAGGGAAATCTTTGTCTTCTGGTTTTGTACTACTTGATTGCCCTCAGTCAATGAAGATAGAAAGCAGTAATGCTTCCCTTGTGGGATCGATAAGCG ATTATTTTCTCTCGCTCTCCAATGGTTGGGACCTGGCAAGCTATCTTAAGTCTCTTTCGAAGGCTGTCAAGGCTTTGAAAATTGGTCCATCCTTATCAAC AAACCCAAAAGAAGGCAATAGCAGCCCTTGTATGGTTATCTATGTAGTGTGCCCCTTTCCTGAACCTGCTGCAGTTCTACAAACTGTCATTGAATCCTCT GTTTCTATTGGGTCAATCATTCCCCCAGCAAATAGAGAGAGGAGGTCTATGTTGCTGGCTCAGGTCGGCAAAGCATTAAGCAGCTTGGCAGCTGTGGATG AAGCGTCAGCATCAAATGTTCTAGTACTTTCTGGGTTTAGCATTCCTAAATTGGTATTGCAAATTGTGACAGTTGATGCCATTTTTAGGGTCACTAGTCC AGCTCTTAATGAGCTCATCATTCTTAAGGAGACTGCTTTCACTGTATACAATAAGGCCCGGCGAATTTCAAAAGGCTCTTCAAATGATGTTCAGCCATCA ACATCAAGTAGATCTCATTTAACACAAATGAGTTCTGTTCCAGCAATGTGGAATTCGTTACCAAGAGAGACTGACATTGATTCTAGATTGAGATCTGGCA CTTGGGATAACTCCTGGCAAACAGCAAGGGCTGGAGGCTTGACCTGTGATCCAAACCGAAATGGAGATTTTTCTCTTCAAGATGAGATCCGCTACATGTT TGAACCACTTTTTATTCTTTCAGAGCCCGGATCTCTGGACCATGCAGTTGCACCTACAATTATTGGTAATATGGTCTCTGAATCTTCAAAACTGCAATCT GATGATACTGGTGGAAGCTTCATGCAAAGTGCAAGCTCAGCAGGGAGTGTGGATTCTGGATCTAGCTCACAACATGATGGATCTGAGCCCGATGGCTATG GATCTAGTTATCAAAAGACTCTTCCAAGCCTGCATTGCTGCTATGGATGGACAGAGGACTGGCGTTGGCTTGTTTGCATCTGGACAGATGCAAGAGGAGA ATTGCTTGACAGCCATATATTCCCTTTTGGTGGAATTAGTAGTCGCCAGGATACAAAAGGTTTGCAATGCCTTTTTGTACAAGTTTTGCAGCAAGGATGT CAGATACTTCAGGCTTGCTCCTCTCCTGACACTGGTGGTGTAAAGCCTAGAGATTTTGTGATTACTCGAATTGGAAACTTCTTTGAGCTTGAGTACATAG AGTGGCAGAAAGCCATTTATTCAGTAGGGGGTTCTGAGGTGAAGAAATGGCCACTGCAACTACGGCGATCAATGCCTGATGGGATGGCTGCAGGCGCTAA TGGTGCTTCCTTGCAGCAACAGGAGATGGGTTTAATTCAAGAAAGAACCTTGCCTTCCTCACCTAGTCCGTTGTATAGCCCTCACTCAAAAGCATCTGGC TATATGAAGGGTGGTTTGGGGCAAACTTCTTCAAGAAAACAGCTTATCGGTGGGCACGCAGCAGTTGACAACTCAAGGGGGATGCTTCAGTGGATGCTGA GCATCAGTTTTGTTACAATTTCAATTGACCATTCTTTACATCTGTTGCTTCAGGCTGATACACCATCTCCTGGAGGAAGTGGCAGTGGTGTTGGCACGTC AATCTATCTGGAAGGTATCACTCCTGTAAAGTCTCTCGGTTCAACATCAGCATCTTACATTTTAATTCCATCACCCAGCATGCGCTTCCTTCCGTCAACA CCCCTGCAGCACCCCACATGCCTCACTGCTGAATCCCCACCACTTGCACATCTCCTTCATAGTAAGGGATCTGCAATTCCGCTCTCCACTGGTTTCGTGG TTTCAAAGGCTGTACCTTCCGTGAGGAGAGATTATAAGAGCAATTCAAGAGAAGAATGGCCTTCTGTTCTTTCTGTGAGTCTCATTGATTATTATGGAGG CAATAATATGACCCAAGATAAAATGTTTCGAAGGATTATGAAGCAGGGGGGACGGACTTTAGGTGTAGATGGTAAAGATTTTGAAATCAGGACCCAGGTA ATTCTTGAGAGTGTCGCAGCAGAACTTCAAGCCCTATCATGGATGACTGTGAGCCCAGCATATTTGGAGCGACGAACCGCACTTCCATTTCATTGTGACA TGGTTTTAAGACTCAGAAGACTGCTTCATTTTGCTGATAAAGAGCTCTCTTCACAGCCTGGTCGGTCACAGGTATAA
AA sequence Show only first row Show all	>Potri.001G004200.1 pacid=42788139 polypeptide=Potri.001G004200.1.p locus=Potri.001G004200 ID=Potri.001G004200.1.v4.1 annot-version=v4.1 MWTNVFKIGGLHHISWFQFLPNESDLNSLPDKSVKVEQKDVATCLVILAHLQLQKEGFLSTWTNSFVGPWDPSQGLHNPDEKIKLWLFLPGRYSSVVEKA QAAVSRLRVVASGIWVAPGDSEEVAAALSQSLRNYIERALARHSYMRFGDVFLKYHPSQSEGLSSKGQPTVEFIFSASEETIFVHVIISAKHIRALSNGD VERVLKHSSTNSSFRLPVIASPHGIRGSLTGCCPSDLVKQVYLSSGKFRTLNGYIGLPYHVSQGPGCQLRGQNCYVEITLGCPRSDSDKALQTNSQSTKN SSKNYIVESIAARRGDQKVSPDHLSAHEKAFIYPAEAVVVPVLQKSFARSSLKRFWLQNWIGPSLPGSSFFMHCGGDTDFLEGSWIESNGVRMQHGYNSS SNSNSSSISSISSGSSDSDYKMTTGELEADADSLSCRQSGLSSNDQMENDGLKLGSKRPRTGMTEPFGQAGMVKNVHMQDFGSVEVNDSAITGIANDQIG SRWDWDDDRGAGMDIQALLSEFGDFGDFFENDDLPFGEPPGTAESQALMFSGPDCGEVANSPIGVMDVVDQMLPPVAFPSFESFNPSPAVVIDESASKSQ EDTHGTLALIPVNCTPSSSSGEFDHLIKAEALMTFAPEYGAVETPTSEFSSSIFRSPYCPKSRQVESSNSSSNNYAYGATPPSSPCFEGSNEKTGIQVNL KTGPGRNDTKKYYTLVEGGKVPLDRRTLTSNESRPTSEAMMPSPLLNSNSSNTVKSAQRKMSDGTLGAESFLVSMKTVLATEVECIMFQASMCRMRHTLL SPGNPTSVNLHRLSGSTGLNQVHGDASTMTDNISGRHEVKKKESIPVRIAGDMDGGVLDGHLSSPVGVWRSVGVPKLTKHTSSSNIEVSVSLPHHSFSEE GVLSYRQRQQPLQELLDGMALLVQQATSFVDVALDADCGDGPYGWLALQEHWRRGFSCGPSMIHAGCGGTLASCHFLDIAGVELVDPLSADIHSSAVTTL LQSEIKIALKSAFGNLEGPLCVTDWCKGHIQSGDGATTCDGSSGESTLSECKDSSTVTLSVGEPMSPALSSAAGSSSLKASSTPDGAKVDETSQRKSNQE IEPELLPRIKPTVFVLPLPAILVGYQDDWLKTSASSLQLWEKAPFEPYASPKPITYCVVCPDIDPLTSAAADFFQQLGTVYETCKLGTHSPQSLGNQMEM DAGKSLSSGFVLLDCPQSMKIESSNASLVGSISDYFLSLSNGWDLASYLKSLSKAVKALKIGPSLSTNPKEGNSSPCMVIYVVCPFPEPAAVLQTVIESS VSIGSIIPPANRERRSMLLAQVGKALSSLAAVDEASASNVLVLSGFSIPKLVLQIVTVDAIFRVTSPALNELIILKETAFTVYNKARRISKGSSNDVQPS TSSRSHLTQMSSVPAMWNSLPRETDIDSRLRSGTWDNSWQTARAGGLTCDPNRNGDFSLQDEIRYMFEPLFILSEPGSLDHAVAPTIIGNMVSESSKLQS DDTGGSFMQSASSAGSVDSGSSSQHDGSEPDGYGSSYQKTLPSLHCCYGWTEDWRWLVCIWTDARGELLDSHIFPFGGISSRQDTKGLQCLFVQVLQQGC QILQACSSPDTGGVKPRDFVITRIGNFFELEYIEWQKAIYSVGGSEVKKWPLQLRRSMPDGMAAGANGASLQQQEMGLIQERTLPSSPSPLYSPHSKASG YMKGGLGQTSSRKQLIGGHAAVDNSRGMLQWMLSISFVTISIDHSLHLLLQADTPSPGGSGSGVGTSIYLEGITPVKSLGSTSASYILIPSPSMRFLPST PLQHPTCLTAESPPLAHLLHSKGSAIPLSTGFVVSKAVPSVRRDYKSNSREEWPSVLSVSLIDYYGGNNMTQDKMFRRIMKQGGRTLGVDGKDFEIRTQV ILESVAAELQALSWMTVSPAYLERRTALPFHCDMVLRLRRLLHFADKELSSQPGRSQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.001G004200 [exp]	0	1
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.006G208900 [exp]	1.00	0.9221	Pt-SPY.2
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Potri.016G116600 [exp]	2.00	0.9165
AT1G05910			cell division cycle protein 48...		Potri.007G127900 [exp]	3.00	0.9023
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.001G123400 [exp]	3.46	0.9204
AT5G24810			ABC1 family protein (.1.2)		Potri.018G000101 [exp]	3.74	0.9042
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Potri.003G154800 [exp]	4.00	0.9029
AT5G09950			Tetratricopeptide repeat (TPR)...		Potri.013G129500 [exp]	4.58	0.9177
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Potri.006G280200 [exp]	5.00	0.9061
AT3G21290			dentin sialophosphoprotein-rel...		Potri.003G033100 [exp]	6.48	0.9050
AT5G14770			Tetratricopeptide repeat (TPR)...		Potri.019G043101 [exp]	9.16	0.8849

Compare expression of checked genes

Potri.001G004200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.