Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19760 52 / 4e-09 Mitochondrial substrate carrier family protein (.1) AT2G22500 41 / 3e-05 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) AT5G46800 40 / 6e-05 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) AT4G24570 39 / 0.0003 DIC2 dicarboxylate carrier 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G220400 [exp] 52 / 5e-09 AT5G19760 498 / 6e-180 Mitochondrial substrate carrier family protein (.1) Potri.001G004500 [exp] 50 / 1e-08 AT5G19760 519 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.005G157300 [exp] 43 / 8e-06 AT2G22500 412 / 2e-145 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.002G104400 [exp] 42 / 2e-05 AT2G22500 427 / 1e-151 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045200 [exp] 41 / 2e-05 AT2G22500 286 / 3e-98 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045100 [exp] 41 / 4e-05 AT2G22500 451 / 6e-161 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045150 [exp] 41 / 4e-05 AT2G22500 457 / 3e-163 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G047800 [exp] 39 / 0.0001 AT4G24570 435 / 2e-154 dicarboxylate carrier 2 (.1) Potri.001G142600 [exp] 39 / 0.0002 AT5G46800 434 / 1e-154 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007883 [exp] 54 / 1e-09 AT5G19760 536 / 0.0 Mitochondrial substrate carrier family protein (.1) Lus10030361 [exp] 52 / 3e-09 AT5G19760 489 / 9e-177 Mitochondrial substrate carrier family protein (.1) Lus10009270 [exp] 42 / 5e-06 AT2G22500 204 / 8e-67 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Lus10015897 [exp] 41 / 3e-05 AT4G24570 184 / 2e-56 dicarboxylate carrier 2 (.1) Lus10025725 [exp] 41 / 4e-05 AT2G22500 310 / 2e-106 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Lus10035936 [exp] 41 / 5e-05 AT4G24570 209 / 5e-67 dicarboxylate carrier 2 (.1) Lus10024769 [exp] 39 / 0.0003 AT4G03115 401 / 3e-141 Mitochondrial substrate carrier family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G004366.1 pacid=42793614 polypeptide=Potri.001G004366.1.p locus=Potri.001G004366 ID=Potri.001G004366.1.v4.1 annot-version=v4.1 ATGAGACCCAATGCTGATGGAAAGTCCCCGTTCACAAGCTCCCTGGACTGTGCCCTGAAAGTCCTGAAAGCCAGAGGGCTTGTGGGACTCTACAAAGGAT TTCCACTGTTTCTTTGCAGGAGTTTACCTGCTACCACGATCACATGCATGGATGATGTTAGAAGATATCCGGGACTTCGAGGAATTTGCTGGATTGTAGT AGCTCAAGAGTATCCAAGGAGGAGCTGCTCCCTTGATCCTACTCATAATTGTAGTATTTGCAAGCAAGGTTTTAACTTGTTAAGAAAACTGTGTTGCCAG TAA
AA sequence Show only first row Show all	>Potri.001G004366.1 pacid=42793614 polypeptide=Potri.001G004366.1.p locus=Potri.001G004366 ID=Potri.001G004366.1.v4.1 annot-version=v4.1 MRPNADGKSPFTSSLDCALKVLKARGLVGLYKGFPLFLCRSLPATTITCMDDVRRYPGLRGICWIVVAQEYPRRSCSLDPTHNCSICKQGFNLLRKLCCQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19760			Mitochondrial substrate carrie...		Potri.001G004366 [exp]	0	1
					Potri.012G026150 [exp]	3.16	0.9894
					Potri.010G139766 [exp]	5.29	0.9874
AT4G10260			pfkB-like carbohydrate kinase ...		Potri.019G063600 [exp]	5.47	0.9800
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Potri.012G049101 [exp]	6.24	0.9768
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Potri.006G078101 [exp]	6.40	0.9530
					Potri.010G219950 [exp]	6.92	0.9848
AT3G13040	GARP		myb-like HTH transcriptional r...		Potri.018G151400 [exp]	7.14	0.9721
AT1G62680			Pentatricopeptide repeat (PPR)...		Potri.019G099701 [exp]	7.74	0.9769
					Potri.001G004432 [exp]	11.40	0.9639
					Potri.006G127750 [exp]	12.64	0.9612

Compare expression of checked genes

Potri.001G004366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.