Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19780 810 / 0 TUA5 tubulin alpha-5 (.1) AT5G19770 810 / 0 TUA3 tubulin alpha-3 (.1) AT1G64740 785 / 0 TUA1 alpha-1 tubulin (.1) AT1G50010 785 / 0 TUA2 tubulin alpha-2 chain (.1) AT1G04820 785 / 0 TOR2, TUA4 TORTIFOLIA 2, tubulin alpha-4 chain (.1) AT4G14960 783 / 0 TUA6 Tubulin/FtsZ family protein (.1.2) AT1G75780 347 / 7e-116 TUB1 tubulin beta-1 chain (.1) AT5G62690 343 / 2e-114 TUB2 tubulin beta chain 2 (.1) AT5G62700 343 / 2e-114 atgcp3, TUB3 tubulin beta chain 3 (.1) AT1G20010 343 / 4e-114 TUB5 tubulin beta-5 chain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G220300 [exp] 809 / 0 AT5G19780 813 / 0.0 tubulin alpha-5 (.1) Potri.019G036000 [exp] 800 / 0 AT5G19780 813 / 0.0 tubulin alpha-5 (.1) Potri.013G056800 [exp] 795 / 0 AT5G19780 811 / 0.0 tubulin alpha-5 (.1) Potri.001G289500 [exp] 789 / 0 AT4G14960 855 / 0.0 Tubulin/FtsZ family protein (.1.2) Potri.002G111900 [exp] 788 / 0 AT1G50010 858 / 0.0 tubulin alpha-2 chain (.1) Potri.009G085100 [exp] 786 / 0 AT1G50010 852 / 0.0 tubulin alpha-2 chain (.1) Potri.017G081000 [exp] 781 / 0 AT4G14960 852 / 0.0 Tubulin/FtsZ family protein (.1.2) Potri.001G104600 [exp] 346 / 1e-115 AT5G12250 831 / 0.0 beta-6 tubulin (.1) Potri.009G040200 [exp] 344 / 1e-114 AT5G23860 864 / 0.0 tubulin beta 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013765 [exp] 802 / 0 AT5G19770 914 / 0.0 tubulin alpha-3 (.1) Lus10039169 [exp] 802 / 0 AT5G19780 914 / 0.0 tubulin alpha-5 (.1) Lus10005705 [exp] 793 / 0 AT5G19780 850 / 0.0 tubulin alpha-5 (.1) Lus10020281 [exp] 793 / 0 AT5G19780 850 / 0.0 tubulin alpha-5 (.1) Lus10031032 [exp] 784 / 0 AT1G50010 910 / 0.0 tubulin alpha-2 chain (.1) Lus10035422 [exp] 784 / 0 AT1G50010 910 / 0.0 tubulin alpha-2 chain (.1) Lus10002000 [exp] 347 / 6e-116 AT5G62690 824 / 0.0 tubulin beta chain 2 (.1) Lus10035497 [exp] 347 / 6e-116 AT5G62690 824 / 0.0 tubulin beta chain 2 (.1) Lus10021094 [exp] 345 / 3e-115 AT1G75780 857 / 0.0 tubulin beta-1 chain (.1) Lus10026813 [exp] 344 / 1e-114 AT5G12250 867 / 0.0 beta-6 tubulin (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0566 [poplar] [flax] Tubulin PF00091 [poplar] [flax] Tubulin Tubulin/FtsZ family, GTPase domain CL0442 [poplar] [flax] Tubulin_C PF03953 [poplar] [flax] Tubulin_C Tubulin C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G004600.2 pacid=42789796 polypeptide=Potri.001G004600.2.p locus=Potri.001G004600 ID=Potri.001G004600.2.v4.1 annot-version=v4.1 ATGAGAGAAATAATAAGCATTCACATAGGACAAGCGGGGATTCAAGTAGGCAATGCTTGTTGGGAGCTTTATTGTCTTGAACATGACATCCAACCTGATG GAATGATGCCTAGTGACACTTCACCGGGTGCTGCACATGATGCATTCAATACCTTCTTCAGTGAGACTAGCTCTGGAAAACATGTGCCTAGAGCTATTTT TGTTGACTTGGAACCAACTGTTATTGACGAAGTTAGGACTGGAACTTATCGGCAACTTTTCCACCCTGAGCAGCTTATGTCTGGAAAGGAAGATGCTGCT AATAATTTTGCTAGAGGACACTATACAGTTGGGAAGGAAATTGTGGATCTCTGTGTTGATCGAGTGAGGAAGTTGGCTGATAACTGCACTGGCTTACAAG GGTTTTTGGTGTTTAATGCTGTTGGTGGTGGAACGGGGTCTGGTTTGGGGTCTTTGTTGTTAGAACGCTTGTCTGTAGATTATGGAAAGAAGTCAAAGCT TGGATTCACCATTTATCCTTCTCCTCAGGTCTCAACAGCAGTTGTGGAGCCTTACAACAGTGTACTCTCTACTCATTCCCTTCTTGAGCACACAGATGTG GCAGTGCTCTTGGACAATGAAGCTATTTATGACATTTGTCGAAGATCCTTGGATATTGAAAGACCAACATACACAAATTTGAACCGATTGATATCTCAAA CCATATCATCCTTGACAACTTCATTAAGGTTTGATGGAGCCATAAACGTGGATGTTACAGAGTTTCAGACCAACCTTGTGCCATATCCCCGTATCCATTT CATGCTTTCTTCATATGCCCCTGTTATATCAGCTGAAAAGGCGTACCATGAGCAATTGTCAATTCCTGAGATCACAAATGCTGTCTTTGAGCCTGCAAGC ATGATGGCTAAGTGTGATCCTAGACATGGGAAATACATGGCCTGCTGTTTGATGTACCGAGGAGATGTTGTTCCAAAGGATGTCAATGCTGCTGTGGCTA CTATCAAAAGCAAAAGGACTGTTCAGTTTGTTGACTGGTGTCCAACTGGCTTCAAGTGTGGGATCAACTATCAGCCACCTACTGTAGTACCTGGGGGTGA TCTTGCCAAGGTTCAGCGTGCTGTATGCATGATCAGCAACAACACAGCTGTGGCCGAGGTGTTTTCTCGCATTGACCACAAATTTGATCTCATGTACTCC AAGAGGGCTTTTGTCCACTGGTATGTTGGTGAAGGCATGGAAGAAGGGGAATTCTCAGAAGCTCGTGAAGATCTGGCTGCCCTTGAGAAGGATTACGAGG AAGTTGGTGCTGAAGGTGTAGATGATGAAGAGGAAGGTGATGACTATCAATAA
AA sequence Show only first row Show all	>Potri.001G004600.2 pacid=42789796 polypeptide=Potri.001G004600.2.p locus=Potri.001G004600 ID=Potri.001G004600.2.v4.1 annot-version=v4.1 MREIISIHIGQAGIQVGNACWELYCLEHDIQPDGMMPSDTSPGAAHDAFNTFFSETSSGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLMSGKEDAA NNFARGHYTVGKEIVDLCVDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDV AVLLDNEAIYDICRRSLDIERPTYTNLNRLISQTISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSIPEITNAVFEPAS MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKSKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYS KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGVDDEEEGDDYQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.001G004600 [exp]	0	1
AT4G23460			Adaptin family protein (.1)		Potri.001G101400 [exp]	5.00	0.8860
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Potri.008G065200 [exp]	9.16	0.8527
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Potri.014G069800 [exp]	11.13	0.8778	PBF1.2
AT1G09150			pseudouridine synthase and arc...		Potri.005G023600 [exp]	12.40	0.8830
AT3G17430			Nucleotide-sugar transporter f...		Potri.010G001700 [exp]	14.83	0.8420
AT1G04430			S-adenosyl-L-methionine-depend...		Potri.005G226000 [exp]	16.00	0.7982
AT1G45000			AAA-type ATPase family protein...		Potri.005G231700 [exp]	17.66	0.8826	RPT4.1
AT5G05520			Outer membrane OMP85 family pr...		Potri.010G185600 [exp]	17.74	0.7857
AT4G24550			Clathrin adaptor complexes med...		Potri.002G105100 [exp]	18.33	0.8288
AT2G44100		AT-GDI1, ATGDI1	guanosine nucleotide diphospha...		Potri.017G001200 [exp]	18.76	0.8263	Pt-GDI.1

Compare expression of checked genes

Potri.001G004600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.