Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19820 1776 / 0 EMB2734 embryo defective 2734, ARM repeat superfamily protein (.1) AT4G27640 275 / 4e-77 ARM repeat superfamily protein (.1) AT2G16950 51 / 6e-06 ATTRN1 transportin 1 (.1.2) AT5G37400 47 / 9e-05 Family of unknown function (DUF577) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G220100 [exp] 2004 / 0 AT5G19820 1754 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.013G056600 [exp] 1628 / 0 AT5G19820 1644 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.017G137400 [exp] 680 / 0 AT5G19820 682 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.004G082601 [exp] 566 / 0 AT5G19820 554 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.007G084901 [exp] 548 / 0 AT5G19820 509 / 1e-167 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.008G085800 [exp] 293 / 4e-83 AT4G27640 1605 / 0.0 ARM repeat superfamily protein (.1) Potri.010G169800 [exp] 285 / 2e-80 AT4G27640 1584 / 0.0 ARM repeat superfamily protein (.1) Potri.007G084501 [exp] 187 / 5e-54 AT5G19820 184 / 1e-53 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.004G122133 [exp] 147 / 9e-40 AT5G19820 140 / 4e-38 embryo defective 2734, ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013763 [exp] 1273 / 0 AT5G19820 1295 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Lus10039172 [exp] 1192 / 0 AT5G19820 1229 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Lus10034202 [exp] 271 / 1e-75 AT4G27640 1652 / 0.0 ARM repeat superfamily protein (.1) Lus10029067 [exp] 268 / 1e-74 AT4G27640 1646 / 0.0 ARM repeat superfamily protein (.1) Lus10008863 [exp] 45 / 0.0005 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10008864 [exp] 45 / 0.0005 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10023246 [exp] 45 / 0.0005 AT5G53480 1449 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF02985 [poplar] [flax] HEAT HEAT repeat CL0020 [poplar] [flax] PF04510 [poplar] [flax] DUF577 Family of unknown function (DUF577) CL0020 [poplar] [flax] TPR PF13646 [poplar] [flax] HEAT_2 HEAT repeats
Representative CDS sequence Show only first row Show all	>Potri.001G004800.1 pacid=42791025 polypeptide=Potri.001G004800.1.p locus=Potri.001G004800 ID=Potri.001G004800.1.v4.1 annot-version=v4.1 ATGGACGAGTCAACTCAATTCCAGCAATCTCAACTCGCTGCCATCCTCGCCGGCGATCCTTCTCAATTCGAAATCTTAATCTCTTCCCTTATGTCTTCCT CTAATGAAACCCGATCTCAAGCCGAGCTTCTGTTCAACCTCGCCAAACAACACGATCCTAACTCACTCTCTCTCAAACTCGCTCAACTCCTTCAATTCTC TCCTCACCTTGATGCTCGTGCCATGTCAGCCGTCCTCCTCCGTAAACTCCTCACTCGAGACGACTCCTACCTCTGGCCGCGCCTCTCGTTACAAACTCAG TCCTCTCTCAAATCGATCCTGCTTGCCTGTCTCCAGCAGGAATCTGTTAAATCGATCACCAAGAAGTTGTGCGACACCGTTTCCGAGCTTGCTTCCGGGA TTTTGCCTGATAATGGATGGCCAGAGCTTTTGCCGTTTATGTTTCAGTGTGTGACGTCAGATTCTGTTAAGTTGCAGGAATCTGCTTTTTTGATTTTCGC ACAGCTGTCGCAGTATATTGGAGAGAGTTTGGTTCCCTATATCAAGGAGCTGCACGGGGTTTTTCTACAGTGTTTGGGATCCAGCACGAACTTCGATGTG AAAATCGCGGCTTTGAATGCTGTGACTAACTTTATCCAGTGTTTGAATAATACGTCTGAGAGGGACCGGTTTCAGGATTTGTTGCCGTCGATGATTAGGA CTTTAACGGAGGCGTTGAATAATGGGAATGAGGCGACAGCACAGGAGGCGTTGGAGTTGTTGATTGAATTGGCAGGGGCGGAGCCCAGGTTCTTGCGGAG GCAGCTGGTGGATGTTGTGGGGTCAATGTTGCAGATTGCCGAGGCAGAGGGTTTGGAGGAAGGGACTAGGCATTTGGCTATTGAGTTTGTGATCACGTTG GCGGAAGCTAGGGAGAGGGCACCAGGGATGATGAGAAAGTTACCTCAGTTTATTAGTAGATTGTTTGCGATATTGATGAGCATGTTGCTGGATATTGAGG ATGATCCAGCGTGGCACAGTGCAGAGAACGAGGATGAAGATGCAGGGGAATCGAGTAATTATAGCATGGGACAAGAGTGTTTGGATAGGTTGGCGATTTC TTTGGGTGGGAATACTATTGTTCCAGTTGCTTCGGAACAATTGCCTGCCTATTTGGCGGCTCCTGAGTGGCAGAAACATCATGCTGCTCTTATTGCATTA GCTCAGATTGCTGAAGGTTGCTCTAAGGTAATGCTAAAAAATCTGGAACAAGTAGTTACAATGGTCCTAAATTCATTTTATGATCCACATCCCCGTGTGA GATGGGCAGCTATTAATGCAATTGGGCAGTTGTCCACGGATTTGGGTCCAGATTTGCAAAACCAATACCATCAAAGGGTTTTGCCTGCATTAGCAGCTGC CATGGATGATTTTCAGAATCCTCGAGTTCAGGCACATGCTGCTTCAGCAGTTCTTAACTTCAGTGAGAACTGCACTCCAGAAATTTTGACACCTTACTTA GATGGAGTAGTGAGCAAATTGCTTGTTCTTCTACAGAATGGAAAACAAATGGTGCAAGAGGGAGCATTGACTGCTTTGGCATCAGTTGCTGATTCCTCTC AGGAGCACTTCCAAAAATACTATGATGCAGTTATGCCTTACTTGAAGACCATCTTGGTGAATGCAAATGACAAGGCTAACTGCATGCTTCGTGCCAAATC TATGGAGTGCATTAGTCTAGTTGGGATGGCTGTGGGGAAGGATAAGTTCAGGGATGATGCCAAGCAGGTTATGGATGTACTTATGTCATTGCAAGGATCT CAGATGGAGTCGGATGATCCAACGACAAGTTACATGCTCCAAGCATGGGCCAGACTTTGCAAATGTTTGGGACAAGATTTTCTTCCTTATATGAGTGTTG TCATGCCACCTTTGCTTCAGTCTGCTCAACTCAAGCCTGATGTAACCATTACATCTGCAGATTCAGATAATGACATTGATGATACTGATGATGAAAGTAT GGAAACCATCACCCTTGGTGACAAAAGAATAGGGATCAAGACTAGTGTTCTGGAAGAAAAAGCTACTGCTTGTAATATGTTATGTTGCTATGCTGATGAG TTGAAGGAAGGATTCTTTCCATGGATCGATCAGGTTGCTCCAACTTTAGTACCTCTTCTTAAATTTTATTTCCATGAAGAGGTTAGGAAAGCAGCTGTTT CAGCCATGCCAGAACTTCTGCGCTCTGCAAAATTAGCTGTAGAGAAAGGACTTGCGCAAGGTCGCAATGAGTCTTATATAAAGCAGCTGTCTGATTATAT TATTCCCGCTCTGGTTGAAGCATTGCACAAGGAACCTGATACTGAGATCTGTGCAAACATGTTGGATGCATTAAATGAATGCTTACAGATATCTGGGACA TTTGTTGATGAAAACCAAGTGCGATCCATTGTAGATGAGATAAAACTGGTCATCACTGCCAGCTCCAGTCGAAAAAGAGAGAGAGCGGATAGAGCCAAAG CTGAAGACTTTGATGCGGAGGAGAGTGAGTTGATCAAGGAGGAAAATGAGCAAGAGGAGGATGTTTTTGACCAAGTCGGTGAAATCTTGGGAACTCTGAT TAAAACATTCAAAGCCTCTTTCTTGCCTTTATTTGAGGAACTATCATCCTACCTGACTCCTATGTGGGGCAAGGATAAGACTGCTGAAGAGAGAAGGATT GCAATTTGCATTTTTGATGATGTTGCAGAGCAGTGTCGTGAGGCAGCTCTTAAATATTATGACACATATCTTCCTTTCTTACTGGAGGCATGCAACGATG AAAACCCAGATGTTCGGCAGGCAGCTGTATATGGACTTGGTGTTTGTGCAGAATTTGGTGGGTCCGTGTTTAAATCTTTAGTTGGAGAGGCTCTATCAAG ACTTAATGTTGTCATAAGGCATCCTAATGCTAAGCAACCAGACAATGTCATGGCATATGATAATGCTGTTTCTGCTTTAGGGAAAATTTGCCAGTTTCAT CGTGACAGTATTGATTCAGCTCAGGTTGTTCCTGCATGGTTAAACTGTTTGCCAATAACAGGCGATTTGATTGAGGCAAAAGTTGTTCACGAACAACTTT GTTCAATGGTGGAGAGGTCAGACATTGAACTTTTGGGACCCAACAATCAGTATCTTCCTAAGATTGTTTCAGTATTTGCTGAGGTTTTATGTGGTAAGGA TCTAGCGACTGAACAAACTCTAAGCCGAATGGTTAATCTGCTGAGACACCTTCAACAAACCCTACCACCAGCTACCTTGGCCTCAACCTTATCACTGTTG CATCCACAACAACAGTTGGCATTGCAATCCATCCTCTCAACATAG
AA sequence Show only first row Show all	>Potri.001G004800.1 pacid=42791025 polypeptide=Potri.001G004800.1.p locus=Potri.001G004800 ID=Potri.001G004800.1.v4.1 annot-version=v4.1 MDESTQFQQSQLAAILAGDPSQFEILISSLMSSSNETRSQAELLFNLAKQHDPNSLSLKLAQLLQFSPHLDARAMSAVLLRKLLTRDDSYLWPRLSLQTQ SSLKSILLACLQQESVKSITKKLCDTVSELASGILPDNGWPELLPFMFQCVTSDSVKLQESAFLIFAQLSQYIGESLVPYIKELHGVFLQCLGSSTNFDV KIAALNAVTNFIQCLNNTSERDRFQDLLPSMIRTLTEALNNGNEATAQEALELLIELAGAEPRFLRRQLVDVVGSMLQIAEAEGLEEGTRHLAIEFVITL AEARERAPGMMRKLPQFISRLFAILMSMLLDIEDDPAWHSAENEDEDAGESSNYSMGQECLDRLAISLGGNTIVPVASEQLPAYLAAPEWQKHHAALIAL AQIAEGCSKVMLKNLEQVVTMVLNSFYDPHPRVRWAAINAIGQLSTDLGPDLQNQYHQRVLPALAAAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL DGVVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPYLKTILVNANDKANCMLRAKSMECISLVGMAVGKDKFRDDAKQVMDVLMSLQGS QMESDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNDIDDTDDESMETITLGDKRIGIKTSVLEEKATACNMLCCYADE LKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGLAQGRNESYIKQLSDYIIPALVEALHKEPDTEICANMLDALNECLQISGT FVDENQVRSIVDEIKLVITASSSRKRERADRAKAEDFDAEESELIKEENEQEEDVFDQVGEILGTLIKTFKASFLPLFEELSSYLTPMWGKDKTAEERRI AICIFDDVAEQCREAALKYYDTYLPFLLEACNDENPDVRQAAVYGLGVCAEFGGSVFKSLVGEALSRLNVVIRHPNAKQPDNVMAYDNAVSALGKICQFH RDSIDSAQVVPAWLNCLPITGDLIEAKVVHEQLCSMVERSDIELLGPNNQYLPKIVSVFAEVLCGKDLATEQTLSRMVNLLRHLQQTLPPATLASTLSLL HPQQQLALQSILST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.001G004800 [exp]	0	1
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Potri.002G232600 [exp]	1.00	0.8439
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Potri.013G011900 [exp]	2.00	0.8153
AT2G34357			ARM repeat superfamily protein...		Potri.006G137900 [exp]	4.58	0.8077
AT5G14600			S-adenosyl-L-methionine-depend...		Potri.018G120500 [exp]	6.32	0.7515
AT1G42440			unknown protein		Potri.005G250100 [exp]	13.19	0.7666
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.007G107900 [exp]	13.41	0.7786
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Potri.002G054000 [exp]	13.85	0.6724	Pt-UVH6.1
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Potri.008G049700 [exp]	14.73	0.6945
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Potri.002G203700 [exp]	14.73	0.7625
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.004G169500 [exp]	15.58	0.7494

Compare expression of checked genes

Potri.001G004800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.