Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08810 762 / 0 SUB1 calcium ion binding (.1) AT2G04280 486 / 8e-167 unknown protein AT4G12700 474 / 1e-162 unknown protein AT2G41150 81 / 3e-16 unknown protein AT3G56750 73 / 2e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G219200 [exp] 585 / 0 AT4G08810 451 / 1e-155 calcium ion binding (.1) Potri.014G170200 [exp] 496 / 1e-170 AT2G04280 862 / 0.0 unknown protein Potri.006G040400 [exp] 81 / 3e-16 AT3G56750 567 / 0.0 unknown protein Potri.016G035600 [exp] 79 / 1e-15 AT3G56750 549 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039176 [exp] 875 / 0 AT4G08810 845 / 0.0 calcium ion binding (.1) Lus10013761 [exp] 870 / 0 AT4G08810 836 / 0.0 calcium ion binding (.1) Lus10039175 [exp] 472 / 6e-166 AT4G08810 463 / 5e-163 calcium ion binding (.1) Lus10041091 [exp] 459 / 2e-157 AT2G04280 745 / 0.0 unknown protein Lus10036415 [exp] 454 / 2e-149 AT2G04280 828 / 0.0 unknown protein Lus10018111 [exp] 82 / 1e-16 AT2G41150 555 / 0.0 unknown protein Lus10008860 [exp] 81 / 5e-16 AT2G41150 545 / 0.0 unknown protein Lus10022403 [exp] 81 / 5e-16 AT2G41150 560 / 0.0 unknown protein Lus10023250 [exp] 74 / 6e-14 AT2G41150 547 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G005500.4 pacid=42788505 polypeptide=Potri.001G005500.4.p locus=Potri.001G005500 ID=Potri.001G005500.4.v4.1 annot-version=v4.1 ATGAAAGAAACTAATCCTGGAGCTGATCCTATAGGGCAGAACCTGATAAAGCTGATAAGTAATGTGTGTTTCTCAGTGTTTGTGTTCTCAGTTTTGATAT TTACTGTTATTGCAATCACTTACCAACCACCAGATCCATGGCTGGAATCCGCTCCGGCTTTAACAAAACTCTTTACGCAAACTGAGAATGCTACTTTTAA AATTGATGATACTGTTGCCAAAACTGGCGAGGATTTGCAAACTGAGATTGCCCGTGCAGTTTCTCCTACCGCGGATATTAAACCAATTACCGAGGAGGTG ATTGAGAAAGAGGAGGTGGAAGTGAGCAATATGACCCTCAAATCATCTGGTTGTGAGGATTTGGAGGTAGTGAATTGTTCAGACCCGAGGGTTTTGATTA CAGTTGAGAAGTTCAATTTGAGGCTGTTTAAGTCAATTGTGTTTTTGGATTATCAAACTCCTGTTAATGGATCGAAGCAGGACGAGTGTGATGTGTCATG GAGGTTTAGGAATAAGAAGGAGAAGTCGTGGAGGAAATATAGGGATTTTAGGAGGTTTAAGTTTGCAATTGGAGAGAATTGTTCTTACAAAATTGTGCAT GCCGGTGGTTGGCATTCTGGTATTAATGCCAGGAGGATGAGGACAAGAGTTAATTCCACTAGGAGTGGTGGAAATAATCCGAGAGCTGCACCATTGGTTC GGGATGATGAGATTAATGACACAATCCCAAGCTTGGGATCAGAAACGAACTTTAGAAAAGGGAAGTACTTGTATTATTCAAGAGGAGGGGATTATTGCAA GGGAATGAATCATTACATGTGGAGTTTCTTGTGTGGGTTGGGGGAGGCTATGTATTTGAACAGGACATTTGTCATGGACTTGAGTATATGCTTGGCAGGT AATTATAATCCGGATGGGAAGGATCAGGAGGGGAAGGATTTTAGGTTTTATTTTGATTTTGAGCATCTTAAGGAGGAGGCGTCAATTGTTGAAGAGGGTG AATTTTTGAGAGGTTGGAAGAAATGGGATCGCTCCCATAAGAAGAAAGTTCCAGTTAAGAAGGTCGTGACCCATAAGATGACACCCATGCAACTAAGGAA AGACAAGAGCACAGTCATATGGAGGCAGTTTGATGGTCAGGAGCCAGAAAACTATTGGTATAGGGTGTGTGAAGGGCAAGCTGCAAAGTACATTCAGAGG CCATGGTATGCGCTTTGGAAATCAAAGAGATTGATGAATATAGTTACAGACATCAGTGGGAGAATGGACTGGGATTTTGATGCGGTTCATGTGATTCGTG GGGAGAAAGCGCAGAATAAAGTGCTCTGGCCACATTTGGATGCTGATACATCACCTGATGCACTCGTTGCAAAGCTTCAAGGGATGATTCAGCCTTGGAG GAATCTGTATATAGCAACCAATGAACCATTCTACAATTACTTCGATAAACTGAGGTCTCACTTCAAGGTCCATTTACTTGATGATTACAAGGAATTATGG GGAAATACAAGTGATTGGTACAATGAGACAATGCTTTTGAACAGTGGTCGTCCTGTTGAGTTTGATGGATACATGAGAGTTGCTGTGGATACTGAGGTTC TTTACAGAGGAAAGACTCGTGTGGAGACATTTTATAATTTAACCAGTGACTGCAAGGATGGAATCAATACATGCTGA
AA sequence Show only first row Show all	>Potri.001G005500.4 pacid=42788505 polypeptide=Potri.001G005500.4.p locus=Potri.001G005500 ID=Potri.001G005500.4.v4.1 annot-version=v4.1 MKETNPGADPIGQNLIKLISNVCFSVFVFSVLIFTVIAITYQPPDPWLESAPALTKLFTQTENATFKIDDTVAKTGEDLQTEIARAVSPTADIKPITEEV IEKEEVEVSNMTLKSSGCEDLEVVNCSDPRVLITVEKFNLRLFKSIVFLDYQTPVNGSKQDECDVSWRFRNKKEKSWRKYRDFRRFKFAIGENCSYKIVH AGGWHSGINARRMRTRVNSTRSGGNNPRAAPLVRDDEINDTIPSLGSETNFRKGKYLYYSRGGDYCKGMNHYMWSFLCGLGEAMYLNRTFVMDLSICLAG NYNPDGKDQEGKDFRFYFDFEHLKEEASIVEEGEFLRGWKKWDRSHKKKVPVKKVVTHKMTPMQLRKDKSTVIWRQFDGQEPENYWYRVCEGQAAKYIQR PWYALWKSKRLMNIVTDISGRMDWDFDAVHVIRGEKAQNKVLWPHLDADTSPDALVAKLQGMIQPWRNLYIATNEPFYNYFDKLRSHFKVHLLDDYKELW GNTSDWYNETMLLNSGRPVEFDGYMRVAVDTEVLYRGKTRVETFYNLTSDCKDGINTC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08810		SUB1	calcium ion binding (.1)		Potri.001G005500 [exp]	0	1
AT4G33080			AGC (cAMP-dependent, cGMP-depe...		Potri.006G224800 [exp]	1.41	0.9453
AT1G09610			Protein of unknown function (D...		Potri.003G003801 [exp]	3.46	0.9396
AT5G16730			Plant protein of unknown funct...		Potri.019G047600 [exp]	3.46	0.9285
AT5G58530			Glutaredoxin family protein (....		Potri.001G280400 [exp]	3.87	0.9225
AT4G17920			RING/U-box superfamily protein...		Potri.001G140900 [exp]	5.47	0.9197
AT4G25670			unknown protein		Potri.017G143215 [exp]	5.83	0.8970
AT5G20600			unknown protein		Potri.012G036500 [exp]	6.00	0.9060
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Potri.002G143600 [exp]	6.32	0.9115
AT1G19835			Plant protein of unknown funct...		Potri.005G237100 [exp]	9.74	0.8954
AT1G27920		MAP65-8	microtubule-associated protein...		Potri.001G055100 [exp]	10.58	0.9135

Compare expression of checked genes

Potri.001G005500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.