Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13600 431 / 5e-148 calmodulin-binding family protein (.1) AT3G58480 380 / 2e-128 calmodulin-binding family protein (.1) AT2G26190 364 / 1e-122 calmodulin-binding family protein (.1) AT4G33050 359 / 2e-121 EDA39 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) AT5G57010 332 / 1e-110 calmodulin-binding family protein (.1) AT3G52870 305 / 6e-101 IQ calmodulin-binding motif family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G218800 [exp] 525 / 0 AT3G13600 734 / 0.0 calmodulin-binding family protein (.1) Potri.001G006200 [exp] 520 / 0 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Potri.006G197500 [exp] 402 / 3e-136 AT3G58480 588 / 0.0 calmodulin-binding family protein (.1) Potri.016G063000 [exp] 400 / 4e-136 AT3G58480 587 / 0.0 calmodulin-binding family protein (.1) Potri.018G061901 [exp] 390 / 1e-132 AT4G33050 601 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G226400 [exp] 358 / 1e-120 AT4G33050 598 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G147900 [exp] 344 / 1e-114 AT2G26190 513 / 2e-178 calmodulin-binding family protein (.1) Potri.006G114700 [exp] 320 / 2e-106 AT3G52870 561 / 0.0 IQ calmodulin-binding motif family protein (.1) Potri.006G226500 [exp] 280 / 2e-92 AT4G33050 433 / 9e-151 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039178 [exp] 446 / 1e-153 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Lus10013759 [exp] 437 / 3e-150 AT3G58480 690 / 0.0 calmodulin-binding family protein (.1) Lus10025173 [exp] 416 / 8e-143 AT3G13600 575 / 0.0 calmodulin-binding family protein (.1) Lus10016052 [exp] 415 / 2e-142 AT3G13600 582 / 0.0 calmodulin-binding family protein (.1) Lus10029324 [exp] 368 / 4e-125 AT3G58480 472 / 6e-163 calmodulin-binding family protein (.1) Lus10016219 [exp] 371 / 1e-124 AT3G58480 569 / 0.0 calmodulin-binding family protein (.1) Lus10013526 [exp] 357 / 2e-119 AT5G57010 581 / 0.0 calmodulin-binding family protein (.1) Lus10014872 [exp] 349 / 1e-116 AT4G33050 577 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Lus10003257 [exp] 317 / 3e-105 AT3G52870 576 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10035595 [exp] 317 / 1e-104 AT3G52870 575 / 0.0 IQ calmodulin-binding motif family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G005600.2 pacid=42792651 polypeptide=Potri.001G005600.2.p locus=Potri.001G005600 ID=Potri.001G005600.2.v4.1 annot-version=v4.1 ATGGTTGTAGTCAAAGGATCTGTTAGTATTAACAGGGGAGAATTGGAAAGAACGATGCCAATTACAGGTTCTCCTTTGAAGAAAGAAACGGATGCCATTA CCAAGTCTGTTAGTATTAACAACAAAGAAATGGATCATCAGCCCCTAAACTTAGATAATCATAGCTTCGAGACGATACAGAAATTGAGAATTTTTTATCC CACCAGCCCCGAACACCAAGCTGCTGTAAGATTGCAGAAAGTTTACAAAAGCTACCGAACTAGGAGAATACTTGCAGATTGTGCAATTCTTGTCGACCAG AGCTGGTGGGAACTCTTAGATTTTGCTGAACTCAAATGGATTTCTATTTCTTTCTTTGATATCAAGAAACATCAAGCTGCCATTTCTCGATGGTCACGAG GGAAAAAGAAAGCTGGCAGAGTTGGAAAAGGCTTGTCAAGTGATGACAATGCACAAAAACTTGTTGATAAGCACTGGCTTGAAGCGATCGATCCACGGCA TCGATATGGACATAACCTACAATTCTATTATGAGAGATGGCTTGATACTAAAAGCAGACAACCATTTTTTTACTGGCTAGATATAGGAGAAGGCAAGGAA GTAAATCTTGAAGCATGCCCAAGATCAAAATTTCAAAAGCAGTGCATCAAGTATCTTGGTCCTACAGAAAGGAAGGCCTATGAAGTTGTTATAGAGCAGG GCAAGCTCCTCTACAAGATGACAGGGGAGCTTATTCACACAACGGAAGATGCTAAGTCCATTTTTGTCCTTGATACATCTAAGACCTTGTATGTTGGCAA GAAGAAGAAAGGCACATTCCAGCATTCTAGCTTCTTGGCTGGAGGAGTCACAACTGCTGCTGGCAGATTAATTGTTGAAACTGGCATTCTTAAGGCAGTT TGGCCTCACAGCGGTCATTATTGGCCTACACAAGAAAAATTTCAAGACTTCCTTTCATTCCTCAGAGAAAACAATGTGGATCTCACACATGTAGAGACAA GTGCTCTGGACGAGGAAGACAGAATGCTTTGTAAAGGAAGAAGCAGCGATTGTCTTAGAAGTAACCCACTGGATCAGAACCACTGA
AA sequence Show only first row Show all	>Potri.001G005600.2 pacid=42792651 polypeptide=Potri.001G005600.2.p locus=Potri.001G005600 ID=Potri.001G005600.2.v4.1 annot-version=v4.1 MVVVKGSVSINRGELERTMPITGSPLKKETDAITKSVSINNKEMDHQPLNLDNHSFETIQKLRIFYPTSPEHQAAVRLQKVYKSYRTRRILADCAILVDQ SWWELLDFAELKWISISFFDIKKHQAAISRWSRGKKKAGRVGKGLSSDDNAQKLVDKHWLEAIDPRHRYGHNLQFYYERWLDTKSRQPFFYWLDIGEGKE VNLEACPRSKFQKQCIKYLGPTERKAYEVVIEQGKLLYKMTGELIHTTEDAKSIFVLDTSKTLYVGKKKKGTFQHSSFLAGGVTTAAGRLIVETGILKAV WPHSGHYWPTQEKFQDFLSFLRENNVDLTHVETSALDEEDRMLCKGRSSDCLRSNPLDQNH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13600			calmodulin-binding family prot...		Potri.001G005600 [exp]	0	1
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Potri.016G039000 [exp]	8.77	0.6801
AT5G60760			P-loop containing nucleoside t...		Potri.004G213500 [exp]	9.79	0.6310
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037400 [exp]	22.84	0.6188
AT2G35350		PLL1	poltergeist like 1 (.1)		Potri.001G144700 [exp]	23.21	0.6170
AT4G24015			RING/U-box superfamily protein...		Potri.001G088400 [exp]	30.82	0.5619
AT1G11880			transferases, transferring hex...		Potri.001G008600 [exp]	34.98	0.5936
AT3G23220	AP2_ERF	ESE1	ethylene and salt inducible 1,...		Potri.002G039300 [exp]	47.64	0.6186
AT5G10750			Protein of unknown function (D...		Potri.018G014234 [exp]	48.21	0.5063
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Potri.012G139600 [exp]	48.49	0.5715
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G054100 [exp]	49.60	0.5832

Compare expression of checked genes

Potri.001G005600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.