Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42820 234 / 2e-80 HVA22F HVA22-like protein F (.1) AT1G74520 126 / 2e-37 ATHVA22A HVA22 homologue A (.1) AT5G62490 119 / 1e-34 ATHVA22B ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22 homologue B (.1) AT1G69700 116 / 3e-33 ATHVA22C HVA22 homologue C (.1) AT5G50720 103 / 3e-29 ATHVA22E ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) AT4G24960 103 / 6e-29 ATHVA22D ARABIDOPSIS THALIANA HVA22 HOMOLOGUE D, HVA22 homologue D (.1.2.3) AT4G36720 62 / 4e-12 HVA22K HVA22-like protein K (.1) AT1G75700 57 / 8e-11 HVA22G HVA22-like protein G (.1) AT1G19950 51 / 5e-08 HVA22H HVA22-like protein H (ATHVA22H) (.1) AT5G42560 46 / 2e-06 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062800 [exp] 138 / 5e-42 AT1G74520 255 / 4e-88 HVA22 homologue A (.1) Potri.012G069300 [exp] 136 / 2e-41 AT1G74520 259 / 1e-89 HVA22 homologue A (.1) Potri.014G148600 [exp] 120 / 1e-35 AT5G62490 87 / 1e-22 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22 homologue B (.1) Potri.015G099700 [exp] 109 / 5e-31 AT5G50720 166 / 5e-54 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Potri.012G101600 [exp] 105 / 1e-29 AT5G50720 133 / 3e-41 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Potri.005G152100 [exp] 92 / 2e-22 AT1G69700 102 / 1e-25 HVA22 homologue C (.1) Potri.009G078500 [exp] 80 / 5e-18 AT1G74520 104 / 6e-26 HVA22 homologue A (.1) Potri.001G283000 [exp] 74 / 5e-16 AT1G74520 98 / 1e-23 HVA22 homologue A (.1) Potri.017G139000 [exp] 70 / 2e-14 AT1G74520 119 / 5e-32 HVA22 homologue A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010944 [exp] 224 / 5e-76 AT2G42820 246 / 7e-85 HVA22-like protein F (.1) Lus10031386 [exp] 222 / 2e-75 AT2G42820 246 / 4e-85 HVA22-like protein F (.1) Lus10023605 [exp] 131 / 7e-39 AT1G74520 246 / 7e-84 HVA22 homologue A (.1) Lus10024234 [exp] 131 / 7e-39 AT1G74520 244 / 5e-83 HVA22 homologue A (.1) Lus10037191 [exp] 128 / 1e-37 AT1G69700 231 / 6e-78 HVA22 homologue C (.1) Lus10042193 [exp] 127 / 1e-34 AT5G39850 327 / 2e-108 Ribosomal protein S4 (.1) Lus10032557 [exp] 110 / 1e-31 AT5G50720 172 / 8e-57 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Lus10008623 [exp] 109 / 6e-31 AT1G74520 234 / 5e-80 HVA22 homologue A (.1) Lus10043186 [exp] 107 / 3e-30 AT5G50720 169 / 1e-55 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Lus10010093 [exp] 49 / 2e-07 AT4G36720 202 / 2e-66 HVA22-like protein K (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03134 [poplar] [flax] TB2_DP1_HVA22 TB2/DP1, HVA22 family
Representative CDS sequence Show only first row Show all	>Potri.001G006000.1 pacid=42793357 polypeptide=Potri.001G006000.1.p locus=Potri.001G006000 ID=Potri.001G006000.1.v4.1 annot-version=v4.1 ATGGGTGTTCTTGGTGTAGTTGCAAAGCGTTTGGATGCATTTGTCGGGCCCGGAATCATGCTTGTTTTTCCACTGTATGCATCATTGCGAGCCATCGAAA GCCCTTCATCTCTTGATGACCAACAGTGGCTAACCTATTGGATAATATACTCTTTCATTTCCATTTTCGAGTTATCATTTTGGAGAATCCTAGTTTGGCT ACCCTTCTGGCCATACATGAAGTTGTTGTTTTGTATGTGGCTGGTACTGCCCGTTTTCAGTGGGGCTTCATATATCTATATGAACTTTGTGAGGAAGTAT GTGAAGTTTGGTGGCACAGTGAATGGGGATTACCCAGAAGAAAGAAAGAAGGTTCTCCAGATGCTGAGCCTTGATGCAAGGATTGCAGTGAACCAATATG CCGATAAAAATGGATGGAGTGCTGTTGAAAAAGCTATCAAAGCTGCTGAAAGAGAAGTAAAGAAGAGCTATTGA
AA sequence Show only first row Show all	>Potri.001G006000.1 pacid=42793357 polypeptide=Potri.001G006000.1.p locus=Potri.001G006000 ID=Potri.001G006000.1.v4.1 annot-version=v4.1 MGVLGVVAKRLDAFVGPGIMLVFPLYASLRAIESPSSLDDQQWLTYWIIYSFISIFELSFWRILVWLPFWPYMKLLFCMWLVLPVFSGASYIYMNFVRKY VKFGGTVNGDYPEERKKVLQMLSLDARIAVNQYADKNGWSAVEKAIKAAEREVKKSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42820		HVA22F	HVA22-like protein F (.1)		Potri.001G006000 [exp]	0	1
AT3G17380			TRAF-like family protein (.1)		Potri.008G005300 [exp]	1.73	0.9881
AT5G51160			Ankyrin repeat family protein ...		Potri.014G050700 [exp]	2.23	0.9759
AT1G03080			kinase interacting (KIP1-like)...		Potri.001G322200 [exp]	3.60	0.9663
AT2G34540			unknown protein		Potri.004G064900 [exp]	6.00	0.9726
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340600 [exp]	6.48	0.9780
AT1G63310			unknown protein		Potri.011G149100 [exp]	6.92	0.9788
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Potri.011G135400 [exp]	8.00	0.9769
AT5G51160			Ankyrin repeat family protein ...		Potri.014G051100 [exp]	9.16	0.9662
AT3G15800			Glycosyl hydrolase superfamily...		Potri.003G032600 [exp]	10.48	0.9721
					Potri.008G018000 [exp]	10.95	0.9640

Compare expression of checked genes

Potri.001G006000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.