Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41890 389 / 1e-123 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) AT1G34300 342 / 7e-105 lectin protein kinase family protein (.1) AT4G32300 204 / 3e-55 SD2-5 S-domain-2 5 (.1) AT5G35370 194 / 2e-51 S-locus lectin protein kinase family protein (.1) AT4G00340 192 / 5e-51 RLK4 receptor-like protein kinase 4 (.1) AT4G11900 187 / 3e-49 S-locus lectin protein kinase family protein (.1) AT2G19130 184 / 2e-48 S-locus lectin protein kinase family protein (.1) AT4G21390 183 / 6e-48 B120 S-locus lectin protein kinase family protein (.1) AT5G24080 176 / 9e-48 Protein kinase superfamily protein (.1) AT4G21380 181 / 2e-47 ARK3 receptor kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G053700 [exp] 489 / 4e-162 AT2G41890 765 / 0.0 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) Potri.016G053800 [exp] 465 / 8e-153 AT2G41890 768 / 0.0 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) Potri.013G115700 [exp] 367 / 2e-114 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.019G086200 [exp] 358 / 5e-111 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.019G086400 [exp] 353 / 6e-109 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.013G115800 [exp] 346 / 8e-107 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.019G086300 [exp] 335 / 3e-102 AT1G34300 847 / 0.0 lectin protein kinase family protein (.1) Potri.015G026300 [exp] 286 / 4e-84 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.010G103300 [exp] 254 / 1e-72 AT1G34300 375 / 1e-117 lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006052 [exp] 355 / 6e-110 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10039315 [exp] 285 / 2e-83 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10013252 [exp] 263 / 3e-76 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10028711 [exp] 251 / 2e-73 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10029802 [exp] 249 / 5e-71 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024195 [exp] 244 / 3e-69 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 224 / 5e-62 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10002917 [exp] 224 / 7e-62 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10024348 [exp] 219 / 5e-60 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10042266 [exp] 214 / 9e-59 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G006100.1 pacid=42787965 polypeptide=Potri.001G006100.1.p locus=Potri.001G006100 ID=Potri.001G006100.1.v4.1 annot-version=v4.1 ATGTGTGTGACTAGGAATAAAGGGGTGAATTATGAGAAATTCATCGAGCATTTTCAAGGTAAGACTAGAAAGTTTGAAAGGCTTAGCTTAGCTTTAGCTG TGTTTGTGTTTTTGGGCTCTGTTTTTTGTTGCTTTTGTATTGAGGTTGCTATGGTATCAGTGCCTCTTGGTTTTGAGATTTCAGGGTTTGATAGAAGTAG AACTTGGGTGTCTCAAAATGGGGTCTTTGCATTTGGGTTCTTAGAGAGTTGTTCAAAAGAAGATGAAGTTGATAGCTTTGTTGTGGGAATTAGGTATAAT TTAGGAGATAATGAAGCTGTAAATGTTCCTGTATGGAGTGTTGGTGGTGGTCTTAGGGTCTCTATGAACTCCACGATTAGGCTTTCCATGGACGGGAGGC TAATTTTGTTAGATAACCCTAGTGGTGTGATTGTTTGGAGTAGTGATACTTCTAGTTTAGGTATTAGAAAGGCCAGTCTTTTGAATAATGGGAACTTAGT TCTTGTGGGTATTGAAGATAATGTGCTTTGGCAAAGTTTTAATAGCCCAACTAGCACTCTCCTTCCTGGTCAGTCTTTGCATTTTCCTCAAACCCTAAGA GCCCCTTCCAAAAAATCAACATCTAGTTACTACAGTTTTGTGATTCGGCACTCCGGAGAGCTTGCTCTTGTTTGGGAGAATAATGTGACCTATTGGAGTA ATCATGTGAACCTTCTTGGGAGTGTTAAGGAAGCAATACTCGATGGTAATGGTCTTTTGGGGCTTATTGATACCAGTAATAAAACCGTGTGGTCCATATC AAGCAAGGATTTTGATGAACCTTCTCCGACATTGAGGCGTCTTAAGATGGATTCTGATGGGAATTTGAGAATCTACTCATGGAACCATGTGCTCCATGAA TGGAAGGTTGGGTGGCAAGCAGTTGAAAACCAATGTGATGTATTTGGTTCATGTGGTCTTTATAGTTTATGCGGGCTTAATTCCTCTGGAGCTGTCTGTG ATTGTCTTTACCAGGATTCGGTAAATTGGGGAACTGGCCTATCCACAGTGGATTCAGGTAGTTCCGGGTGCAAGAAGATGGTGGATTTGGGGAACTGCAA GATGAATACAAGCATGATGGTTATGAGACAGACATTTTTGTATGGTCTTTATCCTCCCCAGGATGTTGATATCATGCTGAGCGAGAAAGCTTGTAAAGAA TACTGCTCTAATGACACGACCTGCATTGCAGCAACTTCAAAAAATGATGGTACGGGTATTTGCACAATCAAGCGAACCAGTTTCATTAGTGGGTACGGGA ATCCTTCTGTTTCTGCTACTTCATTCTTAAAAGTGTGTCTGGTCCCTCAGGCTGTTTCTGCTCGAGGAGCTAATCCTCATGTTACTGCGAAGCCAATTCC CACAACCAGAGGAGGTGACGGCAAGAACTTCACTGCAGCTATTGCTTTGATAGTTTTGGTAACAGCATCAGGTTTTCTGGCCATTGAGATGTTTGTGTTT TGGTTTATGTACCGCAAACGGAAAATTAAAGCTCACGTAAGAACTCCCTTTGGCAAGGATGCTCAAATGAATGCTCATTACAATAGTCTTATCAGATTAA CCTTCGAAGAGATAAAAGAGATAACATCTGACCTTGCAAATAAACTTGGCCCCTCTGTTTATAAAGGTGCATTACCAAACAAAACAACTGTTATTGTGAA GGCTCTGAATGATGTGACAGCAAATGAGAAGGATTTCCGAGTTGCAGTCTCTACATTAGGAAGAATGCACCATCGGAACCTTGTGCTATTAATGGGTTTC TGTTTTGAGGCCAACAACAGGTTTTTAATGTATGAGTTTGTCCAGAATGGTTCTCTGGATAAATGGCTGCTCAACATGGAACCTGACCACAATGAAGGGA CATGGCAGCAGAGACTTGACATTGCGCTTGGAGTTGCTCGGGCCCTTGCTTATTTGCACTCAGAATGTCAGATATGTGTAGCTCATGGGAACTTGAAGCT CGAGAATGTCCTGCTCGATGAAAATTTCATTCCTAAATTGACTGATTTTGGACTTGGAAGCTTGTTCGAGGAGGAGGCAGCATCCTCCTCAGTGTCTCCT TCAGAAAGAGATATCTACATGTTTGGGGAGATGCTGCTGCAAATTGTCACTTGCAAGAGGGATATACTGAGTGAAAATCTGAACCATTTGGTTGAGAAGA CGAATGAAGAACCGAACTCAGAGGATAGCATAATCTCTGAAGAAGTAGAAAGAGTAGTGAGGATAGCTTTGTGGTGTATGCAAAATCAGCCCTTTTTACG ACCTTCCATTGGCGAAGTGGTTAAGGTATTAGAAGGTACACTTTCTGTAGATAGGCCTCCATTAGGTTTTGCTTTTAGACCGGACCAGATGGAAGGGAGA GTTTTAACTGAGGTTGAAGTAGACTCCTCCTAG
AA sequence Show only first row Show all	>Potri.001G006100.1 pacid=42787965 polypeptide=Potri.001G006100.1.p locus=Potri.001G006100 ID=Potri.001G006100.1.v4.1 annot-version=v4.1 MCVTRNKGVNYEKFIEHFQGKTRKFERLSLALAVFVFLGSVFCCFCIEVAMVSVPLGFEISGFDRSRTWVSQNGVFAFGFLESCSKEDEVDSFVVGIRYN LGDNEAVNVPVWSVGGGLRVSMNSTIRLSMDGRLILLDNPSGVIVWSSDTSSLGIRKASLLNNGNLVLVGIEDNVLWQSFNSPTSTLLPGQSLHFPQTLR APSKKSTSSYYSFVIRHSGELALVWENNVTYWSNHVNLLGSVKEAILDGNGLLGLIDTSNKTVWSISSKDFDEPSPTLRRLKMDSDGNLRIYSWNHVLHE WKVGWQAVENQCDVFGSCGLYSLCGLNSSGAVCDCLYQDSVNWGTGLSTVDSGSSGCKKMVDLGNCKMNTSMMVMRQTFLYGLYPPQDVDIMLSEKACKE YCSNDTTCIAATSKNDGTGICTIKRTSFISGYGNPSVSATSFLKVCLVPQAVSARGANPHVTAKPIPTTRGGDGKNFTAAIALIVLVTASGFLAIEMFVF WFMYRKRKIKAHVRTPFGKDAQMNAHYNSLIRLTFEEIKEITSDLANKLGPSVYKGALPNKTTVIVKALNDVTANEKDFRVAVSTLGRMHHRNLVLLMGF CFEANNRFLMYEFVQNGSLDKWLLNMEPDHNEGTWQQRLDIALGVARALAYLHSECQICVAHGNLKLENVLLDENFIPKLTDFGLGSLFEEEAASSSVSP SERDIYMFGEMLLQIVTCKRDILSENLNHLVEKTNEEPNSEDSIISEEVERVVRIALWCMQNQPFLRPSIGEVVKVLEGTLSVDRPPLGFAFRPDQMEGR VLTEVEVDSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41890			curculin-like (mannose-binding...		Potri.001G006100 [exp]	0	1
AT1G34300			lectin protein kinase family p...		Potri.019G086400 [exp]	4.00	0.7679
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Potri.018G097600 [exp]	10.00	0.6992
AT3G24150			unknown protein		Potri.018G128700 [exp]	10.67	0.7584
AT5G23280	TCP	TCP7	TCP family transcription facto...		Potri.007G074028 [exp]	13.92	0.7625
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Potri.004G180766 [exp]	14.28	0.7125
AT1G55630			Pentatricopeptide repeat (PPR)...		Potri.012G141400 [exp]	17.54	0.7121
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G046100 [exp]	18.52	0.7276
AT1G63080			Pentatricopeptide repeat (PPR)...		Potri.005G047400 [exp]	20.90	0.6949
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050180 [exp]	22.18	0.7547
AT3G21690			MATE efflux family protein (.1...		Potri.011G002500 [exp]	23.62	0.7470

Compare expression of checked genes

Potri.001G006100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.