Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13560 632 / 0 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT2G01630 475 / 1e-164 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G66250 449 / 2e-154 O-Glycosyl hydrolases family 17 protein (.1) AT1G11820 446 / 7e-153 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 353 / 2e-117 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 337 / 5e-111 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 330 / 1e-108 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 330 / 9e-108 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G56590 322 / 9e-105 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 301 / 1e-96 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G218500 [exp] 904 / 0 AT3G13560 594 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.010G108500 [exp] 505 / 2e-176 AT2G01630 708 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G086400 [exp] 494 / 4e-172 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.017G130200 [exp] 489 / 3e-170 AT1G66250 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G133200 [exp] 484 / 5e-168 AT2G01630 721 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.011G006100 [exp] 468 / 3e-161 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G010500 [exp] 457 / 3e-157 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G224600 [exp] 348 / 1e-115 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G068600 [exp] 344 / 2e-113 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039179 [exp] 676 / 0 AT3G13560 634 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10013758 [exp] 641 / 0 AT3G13560 595 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10013465 [exp] 480 / 1e-166 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10007929 [exp] 464 / 1e-160 AT2G01630 730 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10002295 [exp] 464 / 4e-160 AT1G66250 753 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004044 [exp] 463 / 7e-160 AT1G66250 752 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10034607 [exp] 455 / 3e-157 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10031456 [exp] 447 / 4e-153 AT1G11820 796 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10015151 [exp] 349 / 1e-115 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10018306 [exp] 338 / 3e-111 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.001G006500.1 pacid=42788007 polypeptide=Potri.001G006500.1.p locus=Potri.001G006500 ID=Potri.001G006500.1.v4.1 annot-version=v4.1 ATGGTGCTTGGAAATCTTCTTTTGTTTATTGTTGGCATTTTCAGCTATGCATCAGGCGCATTTGTAGGAATAAATCTTGGAACTGATGTTTCAAACATGC CATCGGCTCCAGATGTGGTTTCAATTCTTAAAGCCAATCAGATTACTCATCTGCGCCTCTATGATGCTGATGCCCACATGTTGAAAGCCCTTGCAGACAG TGGGATTGAAGTAATGGTTGGTGTTACAAATGAGGAGGTCTTAGGAATTGGAGAATCTCCATCAAAAGCAGCAGCATGGATCAATCAAAATGTTGCAGCT TACTTGCCTTCAACCAGCATTACAGCCATTGCGGTTGGCAGTGAGGTTCTTACCTCAATCCCTAATCTTGTCACTGTTTTGGTTCCTGCCATGAACTACC TCCACAAAGCCCTTGTTGCTTCAAATCTAAATTTTCAGGTCAAAATTTCAACCCCTCAAGCCATGGACATTATCCCAAGGCCTTTCCCCCCCTCAACTGC CACCTTTAATTCCTCATGGAGCGCTACAGTTTATCAGATTCTTCAGTTCTTGAAAAACACAGACTCGTTCTACATGTTAAACGCATATCCATATTTTGGA TACACATCTGGAAATGGCATTTTCCCTCTTGATTATGCTCTCTTCCGATCACTTCCCTCGGTCAAACAGATTGTTGACCCCAACACTCTTTCTCACTATG ACAGCATGTTTGATGCTTTGGTTGATGCAACCTATTATTCTATAGAAGCTCTGAATATGTCTGGGATCTCAATTGTAGTTACAGAAACTGGCTGGCCTTG GCTTGGTGGAGCCAATGAACCTGATGCCACTGCAGAAAATGCTGAGACCTTCAATAGTAATTTGATTCGGAGAGTTCTAAATGATTCAGGGCCACCTAGT CAGCCAAAAGTTCCCATCAACACATACATTTATGAGTTGTTCAATGAAGACAAGAGGCCTGGGCCCGTGTCTGAGAAAAACTGGGGCTTATTTTTTACCA ATGGCAGTGCTGTTTATACTTTTAGTTTGAGCACTTCGAATCAAATTACTGGAAATAATTCTGATTTCTGTGTTGCGAAACCAAATGCGGATCCTGGTAA GTTGCAAGCAGGGCTGGACTGGGCATGTGGGCAAGGAGGGGCTAACTGCGATGCTATCCAAGAAGGGAAACCATGCTATCTTCCTAATACTTACCAGAAC CATGCATCTTATGCTTACAATGACTATTATCAAAAAAAGCGTTCTGTTGGTGCAACATGCGACTTTGATGGTACTGCTGCAACGACTACGGTTGATCCCA GTTATGGATCCTGTAAATTTACCGGGAGTTCAACTATCACGCCGAACTCAAATGGAGGATTTACAACAACTGTGGCACCTGGACCCGTGACTCCTCAAGG AGGGAGTGCGACTGTGAACCTGCCAGTTTCAAAAATTCAGTTTCTAATATCAGCAGTGTTTCTTGCTCTAGTCTTGCTTTGA
AA sequence Show only first row Show all	>Potri.001G006500.1 pacid=42788007 polypeptide=Potri.001G006500.1.p locus=Potri.001G006500 ID=Potri.001G006500.1.v4.1 annot-version=v4.1 MVLGNLLLFIVGIFSYASGAFVGINLGTDVSNMPSAPDVVSILKANQITHLRLYDADAHMLKALADSGIEVMVGVTNEEVLGIGESPSKAAAWINQNVAA YLPSTSITAIAVGSEVLTSIPNLVTVLVPAMNYLHKALVASNLNFQVKISTPQAMDIIPRPFPPSTATFNSSWSATVYQILQFLKNTDSFYMLNAYPYFG YTSGNGIFPLDYALFRSLPSVKQIVDPNTLSHYDSMFDALVDATYYSIEALNMSGISIVVTETGWPWLGGANEPDATAENAETFNSNLIRRVLNDSGPPS QPKVPINTYIYELFNEDKRPGPVSEKNWGLFFTNGSAVYTFSLSTSNQITGNNSDFCVAKPNADPGKLQAGLDWACGQGGANCDAIQEGKPCYLPNTYQN HASYAYNDYYQKKRSVGATCDFDGTAATTTVDPSYGSCKFTGSSTITPNSNGGFTTTVAPGPVTPQGGSATVNLPVSKIQFLISAVFLALVLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13560			O-Glycosyl hydrolases family 1...		Potri.001G006500 [exp]	0	1
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Potri.001G200400 [exp]	2.00	0.8979	BGAL1.1
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Potri.010G055900 [exp]	2.00	0.9310
AT2G40815			Calcium-dependent lipid-bindin...		Potri.019G065500 [exp]	4.47	0.8890
AT2G34190			Xanthine/uracil permease famil...		Potri.004G058800 [exp]	5.09	0.8804
AT2G25220			Protein kinase superfamily pro...		Potri.001G048500 [exp]	6.00	0.8836
AT4G31360			selenium binding (.1)		Potri.018G004901 [exp]	6.48	0.8787
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Potri.010G125800 [exp]	6.70	0.8782	XYL1.1
AT2G41620			Nucleoporin interacting compon...		Potri.015G026200 [exp]	7.34	0.8731
AT5G20850		ATRAD51	RAS associated with diabetes p...		Potri.006G135200 [exp]	9.79	0.8988
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Potri.006G251200 [exp]	10.39	0.8952	Pt-CPP1.22

Compare expression of checked genes

Potri.001G006500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.