Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55320 1041 / 0 AAE18 acyl-activating enzyme 18 (.1.2) AT5G23050 664 / 0 AAE17 acyl-activating enzyme 17 (.1) AT5G36880 115 / 2e-26 ACS acetyl-CoA synthetase (.1.2) AT3G48990 59 / 1e-08 AMP-dependent synthetase and ligase family protein (.1) AT5G16340 56 / 1e-07 AMP-dependent synthetase and ligase family protein (.1) AT5G35930 53 / 7e-07 AMP-dependent synthetase and ligase family protein (.1) AT5G16370 51 / 3e-06 AAE5 acyl activating enzyme 5 (.1) AT3G16910 50 / 4e-06 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) AT1G75960 48 / 2e-05 AMP-dependent synthetase and ligase family protein (.1) AT1G20560 47 / 4e-05 AAE1 acyl activating enzyme 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G006700 [exp] 1165 / 0 AT1G55320 1078 / 0.0 acyl-activating enzyme 18 (.1.2) Potri.015G056000 [exp] 701 / 0 AT5G23050 1054 / 0.0 acyl-activating enzyme 17 (.1) Potri.014G140900 [exp] 130 / 4e-31 AT5G36880 1191 / 0.0 acetyl-CoA synthetase (.1.2) Potri.015G144700 [exp] 65 / 1e-10 AT3G48990 776 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.005G250700 [exp] 53 / 5e-07 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2) Potri.001G105900 [exp] 52 / 1e-06 AT3G48990 750 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.005G099500 [exp] 51 / 2e-06 AT2G17650 800 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G010600 [exp] 49 / 1e-05 AT1G20560 823 / 0.0 acyl activating enzyme 1 (.1.2) Potri.013G096200 [exp] 47 / 7e-05 AT5G16340 779 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012931 [exp] 1062 / 0 AT1G55320 1008 / 0.0 acyl-activating enzyme 18 (.1.2) Lus10034997 [exp] 1059 / 0 AT1G55320 1003 / 0.0 acyl-activating enzyme 18 (.1.2) Lus10027257 [exp] 672 / 0 AT5G23050 1044 / 0.0 acyl-activating enzyme 17 (.1) Lus10038966 [exp] 672 / 0 AT5G23050 1043 / 0.0 acyl-activating enzyme 17 (.1) Lus10041499 [exp] 125 / 2e-29 AT5G36880 1241 / 0.0 acetyl-CoA synthetase (.1.2) Lus10012595 [exp] 124 / 3e-29 AT5G36880 1246 / 0.0 acetyl-CoA synthetase (.1.2) Lus10034996 [exp] 78 / 6e-15 AT3G13550 202 / 1e-63 FUSCA 9, EMBRYO DEFECTIVE 144, CONSTITUTIVE PHOTOMORPHOGENIC 10, CYTOKININ-INSENSITIVE 4, Ubiquitin-conjugating enzyme family protein (.1.2) Lus10039232 [exp] 66 / 9e-11 AT3G48990 840 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 54 / 3e-07 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016011 [exp] 52 / 1e-06 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G006600.1 pacid=42792903 polypeptide=Potri.001G006600.1.p locus=Potri.001G006600 ID=Potri.001G006600.1.v4.1 annot-version=v4.1 ATGGAGAGGAAAGGCATAGATGAACTGGAAGTGAATGATATAATCAAGGCAGGTCTATGCATAGACAATGCCAAAGAATTTCACAAAATCCTCAAAGAAA CAATTGGTGCTGCTAAAGGGTCAGACCCTAGAGAGTTGTGGCAAAAGCTGGTGGCTAAAAGAGTGCTAAAGCCATGTTATCCACATGGGCTGCACCAACT GGTTTACTACTCTGTCTATGCTCACTGGGATTCCACCAACAATGGACCTCCTCTTTACTGGTTCCCTTCTCTGGATCAGTCAAAACATACAAACTTGGGA AGGATAATGGAAGTTCATGGTCCAAGGCTTTTAGGGACTTCATACAAGGACCCTATTTCAAGTTTTAATCTCTTTCAGAAATTCACTGCTCAACATCCCG AGGCTTATTGGTCAATACTTCTGAAAGAACTTCCTGTTGTATTTCGTGAACCTCCAAGGTGCATTCTAGACATCACTGACAAATCGAAACGAGGGGGAAC TTGGCTTCCAGGTTCAGTTTTGAATATTGCTGAATGCTGTTTACAGCCCAGTAGACATCCTCGAAAAGATGATGATAGTTTGGCAGTCATATGGAGAGAT GAAGGTTGTGATTCCAAACTTCATTGTATGACATTAAAAGAACTTCGAGAACGAGTAATGTTAGTGGCAAATGCAGTGGATGCAACATTTTCGAAGGGGG ATGTAATTGCGATTGACATGCCAATGACAGTCCATGCGATTATAATATATTTTGCGATTATTCTAGCAGGATGCGTTGTTGTATCCATTGCTGATAGCTT TGCAGCAAAGGAAATTGCTACTCGTTTGCATGTGTCTAACGCAAAGGGTATCTTTACTCAGGATTTTATACTGAGAGGGGGGAGAAAGTTCCCCTTATAC AGTCGAGTCGTAGAAGCTGCTCCACATAAAGCTATTGTGCTCCCTGTGAGTGGGGAAGATGTATGCATTAAATTAAGAGAACAGGATCAATCTTGGGGAG ATTTTCTTGCCAGTGTCATAAACCTTCCAAGGCCAAATCATTACTCTCCAGTTTATAATCCAATAGACTTTCCGACTAACATACTCTTTTCATCTGGAAC CACAGGAGAACCAAAAGCTATACCATGGACACAGCTTTCGCCAATTCGAGCAGCTAACGACGGATGGGCTTATGTTGATCTTCAAGTTGGAGATGTTTTC TGCTATCCTACAAATCTAGGATGGGTAGCAGGACCAATTGTGCTTTATGAAGCCTTTCTAAGCGGTGCAACTTTTGCTCTCTATCATGGATCTCCTCTTG GCGGTGGTTTCGGAAAATTTGTTCAGGATGCCGGTGTGACTATTCTGGGCACGATCCCAACTATGGTAAAAGCTTGGAAGAGTACAAATTGCATGAAAGG CTTAAATTGGACAAAGATAAGATCCTTTGTTACTGCTGGAGAAGCCTCTGATGTTGATAATGTCCTCTGGCTTTCTTCAAGAGCTTATTACAAGCCCATT ATTGAAGTTTGTGGAGGCACGGAGCTTGCATCAAGCTACCTCCAAGGAACTTTATTGCAGCCACAAGCCTTTGGAGCGTTAAGCACTGCCTCAATGGCTA CAGGCGTTGTCATCCTTAACGACAACGGAGTTCCTTATCCAGATGATCAACCATGTGTTGGTGAAGTAGGCTTGTTTCCTTTAATCATGGGAGCATCAGA TAGATTGCTTAATGCTGATCATGACAAAATTTACTTCAAGGGAATGCCAATGTATAAAGGAATGCAACTCAGGAGACATGGAGATATCATTAAGAGAACT GCTGGAGGCTATTTCATTGTGCAAGGCAGGGCTGATGACACCATGAATCTTGGTGGCATTAAGACAAGTTCTGTCGAAATCGAACATGCGTGTAACAATG TTGATCAAAGCATAGTGGAAAGTATTGCAATAAGTGCAGCACCAGAAGATGGAGGTCCAGAACTCCTTGTAATGTTTGCTGTACTAAAGGAAGGATATAG TTCAAAACCAGAAGATTTGCAGAAGAAATTCACCAGAGCCATACAGACCAACCTCAATCCTTTGTTCAAGGTAAACCATGTGAGGATTGTTCCCGAGATT CCTAGAACTAGTTCCAACAAGTTATTAAGGAGAGTTTTAAGGGACCAAATGAAGAAAGAGCTGTCCGTTCGAAGTAAAATATAA
AA sequence Show only first row Show all	>Potri.001G006600.1 pacid=42792903 polypeptide=Potri.001G006600.1.p locus=Potri.001G006600 ID=Potri.001G006600.1.v4.1 annot-version=v4.1 MERKGIDELEVNDIIKAGLCIDNAKEFHKILKETIGAAKGSDPRELWQKLVAKRVLKPCYPHGLHQLVYYSVYAHWDSTNNGPPLYWFPSLDQSKHTNLG RIMEVHGPRLLGTSYKDPISSFNLFQKFTAQHPEAYWSILLKELPVVFREPPRCILDITDKSKRGGTWLPGSVLNIAECCLQPSRHPRKDDDSLAVIWRD EGCDSKLHCMTLKELRERVMLVANAVDATFSKGDVIAIDMPMTVHAIIIYFAIILAGCVVVSIADSFAAKEIATRLHVSNAKGIFTQDFILRGGRKFPLY SRVVEAAPHKAIVLPVSGEDVCIKLREQDQSWGDFLASVINLPRPNHYSPVYNPIDFPTNILFSSGTTGEPKAIPWTQLSPIRAANDGWAYVDLQVGDVF CYPTNLGWVAGPIVLYEAFLSGATFALYHGSPLGGGFGKFVQDAGVTILGTIPTMVKAWKSTNCMKGLNWTKIRSFVTAGEASDVDNVLWLSSRAYYKPI IEVCGGTELASSYLQGTLLQPQAFGALSTASMATGVVILNDNGVPYPDDQPCVGEVGLFPLIMGASDRLLNADHDKIYFKGMPMYKGMQLRRHGDIIKRT AGGYFIVQGRADDTMNLGGIKTSSVEIEHACNNVDQSIVESIAISAAPEDGGPELLVMFAVLKEGYSSKPEDLQKKFTRAIQTNLNPLFKVNHVRIVPEI PRTSSNKLLRRVLRDQMKKELSVRSKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Potri.001G006600 [exp]	0	1
AT5G20260			Exostosin family protein (.1)		Potri.006G064700 [exp]	1.00	0.9920
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Potri.004G123200 [exp]	5.47	0.9910	Pt-EXP2.4
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.010G096000 [exp]	6.70	0.9905
AT1G29450			SAUR-like auxin-responsive pro...		Potri.004G181500 [exp]	7.48	0.9903
AT5G18020			SAUR-like auxin-responsive pro...		Potri.009G126400 [exp]	8.06	0.9901
AT5G01870			Bifunctional inhibitor/lipid-t...		Potri.016G136000 [exp]	12.36	0.9867	Pt-LTP2.2
AT1G29140			Pollen Ole e 1 allergen and ex...		Potri.011G111300 [exp]	12.64	0.9871
					Potri.008G104900 [exp]	14.42	0.9786
AT3G04080		ATAPY1	apyrase 1 (.1)		Potri.019G031200 [exp]	14.69	0.9863	Pt-APY1.2
AT2G04570			GDSL-like Lipase/Acylhydrolase...		Potri.014G160100 [exp]	15.49	0.9838

Compare expression of checked genes

Potri.001G006600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.