Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55320 1078 / 0 AAE18 acyl-activating enzyme 18 (.1.2) AT5G23050 674 / 0 AAE17 acyl-activating enzyme 17 (.1) AT5G36880 111 / 5e-25 ACS acetyl-CoA synthetase (.1.2) AT1G75960 54 / 2e-07 AMP-dependent synthetase and ligase family protein (.1) AT5G16340 50 / 4e-06 AMP-dependent synthetase and ligase family protein (.1) AT1G65890 49 / 1e-05 AAE12 acyl activating enzyme 12 (.1) AT3G16910 47 / 3e-05 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) AT5G16370 47 / 5e-05 AAE5 acyl activating enzyme 5 (.1) AT1G66120 45 / 0.0001 AMP-dependent synthetase and ligase family protein (.1) AT1G65880 43 / 0.0007 BZO1 benzoyloxyglucosinolate 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G006600 [exp] 1165 / 0 AT1G55320 1041 / 0.0 acyl-activating enzyme 18 (.1.2) Potri.015G056000 [exp] 715 / 0 AT5G23050 1054 / 0.0 acyl-activating enzyme 17 (.1) Potri.014G140900 [exp] 124 / 3e-29 AT5G36880 1191 / 0.0 acetyl-CoA synthetase (.1.2) Potri.015G144700 [exp] 52 / 2e-06 AT3G48990 776 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.006G036300 [exp] 48 / 2e-05 AT1G66120 687 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G082000 [exp] 48 / 3e-05 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.012G095000 [exp] 46 / 7e-05 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.006G036200 [exp] 46 / 8e-05 AT1G66120 668 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.005G250700 [exp] 46 / 9e-05 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012931 [exp] 1145 / 0 AT1G55320 1008 / 0.0 acyl-activating enzyme 18 (.1.2) Lus10034997 [exp] 1141 / 0 AT1G55320 1003 / 0.0 acyl-activating enzyme 18 (.1.2) Lus10027257 [exp] 690 / 0 AT5G23050 1044 / 0.0 acyl-activating enzyme 17 (.1) Lus10038966 [exp] 687 / 0 AT5G23050 1043 / 0.0 acyl-activating enzyme 17 (.1) Lus10012595 [exp] 126 / 1e-29 AT5G36880 1246 / 0.0 acetyl-CoA synthetase (.1.2) Lus10041499 [exp] 124 / 6e-29 AT5G36880 1241 / 0.0 acetyl-CoA synthetase (.1.2) Lus10034996 [exp] 78 / 7e-15 AT3G13550 202 / 1e-63 FUSCA 9, EMBRYO DEFECTIVE 144, CONSTITUTIVE PHOTOMORPHOGENIC 10, CYTOKININ-INSENSITIVE 4, Ubiquitin-conjugating enzyme family protein (.1.2) Lus10039232 [exp] 55 / 2e-07 AT3G48990 840 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10028375 [exp] 50 / 5e-06 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 46 / 0.0001 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain CL0378 [poplar] [flax] ANL PF16177 [poplar] [flax] ACAS_N Acetyl-coenzyme A synthetase N-terminus
Representative CDS sequence Show only first row Show all	>Potri.001G006700.1 pacid=42787723 polypeptide=Potri.001G006700.1.p locus=Potri.001G006700 ID=Potri.001G006700.1.v4.1 annot-version=v4.1 ATGATGGAGACGAAGAAGAGCATAACTGAAGTGGGAGTTGATGATATAATCAAGGCAGGTTTGTCTGTGGAAGAGGAGGCTAAAGAATTCTACAGAATCC TCAAAGAAACAATTGGTGAAGCAAAAGGGTTAGACCCAAGAGAGGTTTGGAGGAAAGTGGTGGATAATAGAGTGCTAAAACCATGGCATCCTCATGGAGT GCATCAACTTGTTTATTACTCTGTCTACTCTCATTGGGATTCCTCAACCAAGGGCCCTCCTCTTTATTGGTTTCCTTCTCTACACGAATCTAGACGGGCG AACTTGGGACGTGTAATGGAGATTCATGGTCCGAAGCTTTTAGGAACTGAATACAAGGATCCTATAAAAAGTTTTAGCCTCTTTCAGAAATTCTCTGTTG AACATCCTGAGGCTTATTGGTCAATTGTTCTGAAGGAGCTTTCAGTTGTATTTCATGAACCGCCAAAGTGCATTCTCGACACAACTGACAAATCAAAACC TGGAGGAACATGGCTTCCAGGTTCTGTTCTGAATATTGCTGAATGCTGCCTGCAACCTGCAAGCCATCCTAGTAAAAAAGAAGATGATGTGGCTATTGTC TGGAGGGATGAAATGGATGAATCTGTTTTGCACCATTTGAAACTGAAAGAATTTCGAGAACAAGTAATGTTGGTGGCCAATGCACTAGATACAACATTTA CGAAGGGTGATGCAATTGCTATTGATATGCCAATGACAGTCAATGCAGTTATTATATACTTGGCCATTGTATTAGCAGGATTTGTTGTTGTATCTATAGC TGACAGCTTTGCAGCTAAAGAAATTGCTACCCGTTTACGTGTCTCCAATGCAAAGGGTATCTTCACTCAGGATTTTATTCTCAGAGGAGGTCGAAAATTT CCTTTGTACAGTCGTGTTGTAGAAGCTAATTCTTGCAAGGCTATTGTGATCCCTGTGATTGGAAATGATGTAGGGCTTCAATTAAGAAATCAGGATCAGA CATGGATAGATTTTTTGTCCAGTGTCAATCACCTTCCGAGGCCAAATTATTACTCTCCTGTTTATCAACCAGTAGACTCTCTGACTAATATACTTTTCTC ATCCGGAACCACAGGGGATCCAAAAGCTATAGGATGGACACATCTTTCACCAATTCGATGTTCTCACGATGGATGGGCTCACGTTGACATTCAAGAAGGT GATGTCTACTGCTGGCCGACAAATTTAGGGTGGGTGATGGGACCAATTTTACTTTATTCCACCTTTTTATGTGGCGCAACTCTTGCCCTCTTCCATGGGT CTCCTCTTAGCCGGGGGTTCGGAAAGTTCGTTCAGGATGCAGGAGTTACTGTTTTAGGTACAGTTCCAAGCATAGTAAAAGCTTGGAAGAGTACCAACTG TATGGAGGGCTTAGATTGGACAAAGTTGAAATCCTTTTGTAGTACTGGTGAGGCCTCAAATGTTGACGATGACCTTTGGCTTTCTTCGAGAGCTTATTAC AAGCCCATCATTGAATGTTGTGGAGGCACAGAGCTTGCATCATCTTACATCCAAGGATGTCCATTGCAGCCACAAGCTTTTGGAGCATTTAGCACTGCAT CGATGACAACAGGCTTTGTCATCCTTGATGAAAATGGTGTTTCTTATCCAGATGACATGCCTTGTGTTGGTGAAGTGGGTTTATCCCCTCTATTAATGGG AGCAAGTGATAGATTGCTCAATGCTGATCATGACAAAGTTTACTTCAAAGGAATGCCGATGTATAAGGGAATGCAACTTAGGAGACATGGAGACATCATT AAGCGAACAGTTGGAGGCTATTTTGTTGTACAAGGCCGGGCAGATGACACCATGAATCTTGGTGGAATTAAGACAAGTTCTGTTGAAATTGAGCGTGTCT GTGACCGTGCTGAAGAAAGCATCATGGAGACTGCCGCTATCAGTGTAGCACCAGTAGATGGGGGTCCAGAGCTATTGGTAATTTTTGTGGTGCTAAAGAA AGGATTTGATGGGGAACCAGACAAGTTGAAGATGAAATTCTCAAAAGCCATCCAAAACAATCTCAACCCTTTGTTTAAGGTGAGCTTTGTTAAGATTGTT CCTGAGTTTCCCCGAACTGCTTCTAACAAGTTACTAAGGAGAGTTTTGAGGGACCAAATGAAGGATGAGCTATCAGTTCGGAGTAAAATTTAG
AA sequence Show only first row Show all	>Potri.001G006700.1 pacid=42787723 polypeptide=Potri.001G006700.1.p locus=Potri.001G006700 ID=Potri.001G006700.1.v4.1 annot-version=v4.1 MMETKKSITEVGVDDIIKAGLSVEEEAKEFYRILKETIGEAKGLDPREVWRKVVDNRVLKPWHPHGVHQLVYYSVYSHWDSSTKGPPLYWFPSLHESRRA NLGRVMEIHGPKLLGTEYKDPIKSFSLFQKFSVEHPEAYWSIVLKELSVVFHEPPKCILDTTDKSKPGGTWLPGSVLNIAECCLQPASHPSKKEDDVAIV WRDEMDESVLHHLKLKEFREQVMLVANALDTTFTKGDAIAIDMPMTVNAVIIYLAIVLAGFVVVSIADSFAAKEIATRLRVSNAKGIFTQDFILRGGRKF PLYSRVVEANSCKAIVIPVIGNDVGLQLRNQDQTWIDFLSSVNHLPRPNYYSPVYQPVDSLTNILFSSGTTGDPKAIGWTHLSPIRCSHDGWAHVDIQEG DVYCWPTNLGWVMGPILLYSTFLCGATLALFHGSPLSRGFGKFVQDAGVTVLGTVPSIVKAWKSTNCMEGLDWTKLKSFCSTGEASNVDDDLWLSSRAYY KPIIECCGGTELASSYIQGCPLQPQAFGAFSTASMTTGFVILDENGVSYPDDMPCVGEVGLSPLLMGASDRLLNADHDKVYFKGMPMYKGMQLRRHGDII KRTVGGYFVVQGRADDTMNLGGIKTSSVEIERVCDRAEESIMETAAISVAPVDGGPELLVIFVVLKKGFDGEPDKLKMKFSKAIQNNLNPLFKVSFVKIV PEFPRTASNKLLRRVLRDQMKDELSVRSKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Potri.001G006700 [exp]	0	1
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.008G021000 [exp]	5.38	0.8020
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Potri.009G060800 [exp]	14.14	0.6761	CESA4.5
AT4G28650			Leucine-rich repeat transmembr...		Potri.002G256500 [exp]	14.38	0.7655
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.003G176800 [exp]	15.00	0.7585	CHS.5
AT4G24204			RING/U-box superfamily protein...		Potri.007G050500 [exp]	25.76	0.7457
AT4G02090			unknown protein		Potri.002G196900 [exp]	26.88	0.6202
AT5G05270			Chalcone-flavanone isomerase f...		Potri.019G057800 [exp]	28.72	0.7266
AT3G03480		CHAT	acetyl CoA:(Z)-3-hexen-1-ol ac...		Potri.001G447832 [exp]	34.95	0.7311
AT1G03230			Eukaryotic aspartyl protease f...		Potri.019G064700 [exp]	35.87	0.7356
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.016G049400 [exp]	38.07	0.7366	PGIP.3

Compare expression of checked genes

Potri.001G006700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.