Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13610 520 / 0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G55290 506 / 0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G12900 382 / 2e-132 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G12270 326 / 2e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 201 / 1e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06620 194 / 6e-59 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 194 / 7e-59 ATJRG21 jasmonate-regulated gene 21 (.1) AT2G36690 193 / 1e-58 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 187 / 3e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 187 / 6e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G007100 [exp] 624 / 0 AT1G55290 496 / 4e-177 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G006800 [exp] 547 / 0 AT3G13610 371 / 2e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G097900 [exp] 376 / 5e-130 AT3G12900 471 / 4e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G107500 [exp] 227 / 6e-71 AT1G03400 302 / 3e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 211 / 1e-65 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G002800 [exp] 209 / 9e-65 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 206 / 1e-63 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 204 / 4e-63 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 194 / 1e-58 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036082 [exp] 413 / 2e-144 AT1G55290 395 / 2e-137 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10007818 [exp] 218 / 5e-68 AT1G03400 315 / 9e-106 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 197 / 4e-60 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004808 [exp] 192 / 2e-58 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032930 [exp] 189 / 5e-57 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014398 [exp] 189 / 1e-56 AT2G36690 482 / 4e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 186 / 6e-56 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023890 [exp] 187 / 7e-56 AT2G36690 486 / 5e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022191 [exp] 186 / 1e-55 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011981 [exp] 185 / 2e-55 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G006901.1 pacid=42788901 polypeptide=Potri.001G006901.1.p locus=Potri.001G006901 ID=Potri.001G006901.1.v4.1 annot-version=v4.1 ATGGCTCCAACACTTGCAGTGTCATTCAATGACTCCTCAGATATCACTGATTTTGTCCTGAACAAAGGCAATGGAGTAAAGGGTCTCTCCGAGATGGGCC TCGAAAGCCTCCCCAAGCAATATATCCAGCCCCTTGAGGAAAGAATGTGTGGTACCAAAATCATGTCCCATGAATCCATTCCCATCATTGACATGTCAAA ATGGGATGACCCTAAAGTTGCTGAAGCAATCTGTGAGGCTGCAGAGAAATGGGGATTCTTCCAGATTATTAACCATGGAGTTCCCATTGAAGTACTTGAG AATGTTAAGGAAGCAACTCATCAGTTCTTCAGATTACCAGCAGAGGAAAAGAGGAAGTATTTAAAAGAGTTTTCTCCTTCTAACAACGTGCGGTTTGGCA CAAGCTTTAGTCCTGAAGCTGAGAAGGCTTTAGAGTGGAAAGATTACCTTAGTCTCTTTTATGTCTCCGAGGATGAGGCTTCTGCATTGTGGCCTGCGGT TTGCAAGGATCAAGTGCTGGAGTACATGAAGAGATCAGAAACTGTTATCAGAAAGCTACTGGATGTGCTAATGAAGAATCTGAATGTGACTGAGATCGAT GAGACAAAAGAATCCCTCTTAATGGGGTCTAAAAGGACTAACCTTAACTACTATCCGATTTGTCCAAACCCTGAGCTCACTGTAGGAGTTGGCCGCCACT CGGATGTCTCAACACTCACTTTCCTCCTCCAAGATGACATCGGTGGACTTTACGTGCGAGGGAACAATGATAGCTGGATTCATGTTCCTCCTGTTAGCTG CTCCATTGTGATCAATGTTGGAGATGCATTACAAATAATGAGCAATGGTCGATACAAGAGCATCGAGCACCGTGTTATTGCTAACGGAAGTAATAACAGG ATTTCAGTTCCCATTTTCATCAACCCCATGCCATCAGACAAAATCTCTCCTTTCCCTGAAGTGCTGGCCGGTGGCGAGAAGGCCGTGTATAAGGAAGTTC TGTACTCGGATTACGTCAAGCATTTCTTCCGAAAAGCACATGATGGGAAGAAAACAATCGATTTGGCAAAGATATAA
AA sequence Show only first row Show all	>Potri.001G006901.1 pacid=42788901 polypeptide=Potri.001G006901.1.p locus=Potri.001G006901 ID=Potri.001G006901.1.v4.1 annot-version=v4.1 MAPTLAVSFNDSSDITDFVLNKGNGVKGLSEMGLESLPKQYIQPLEERMCGTKIMSHESIPIIDMSKWDDPKVAEAICEAAEKWGFFQIINHGVPIEVLE NVKEATHQFFRLPAEEKRKYLKEFSPSNNVRFGTSFSPEAEKALEWKDYLSLFYVSEDEASALWPAVCKDQVLEYMKRSETVIRKLLDVLMKNLNVTEID ETKESLLMGSKRTNLNYYPICPNPELTVGVGRHSDVSTLTFLLQDDIGGLYVRGNNDSWIHVPPVSCSIVINVGDALQIMSNGRYKSIEHRVIANGSNNR ISVPIFINPMPSDKISPFPEVLAGGEKAVYKEVLYSDYVKHFFRKAHDGKKTIDLAKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13610			2-oxoglutarate (2OG) and Fe(II...		Potri.001G006901 [exp]	0	1
AT3G13610			2-oxoglutarate (2OG) and Fe(II...		Potri.001G006800 [exp]	2.00	0.9989
AT3G13610			2-oxoglutarate (2OG) and Fe(II...		Potri.001G006750 [exp]	2.44	0.9951
AT5G04950		ATNAS1	ARABIDOPSIS THALIANA NICOTIANA...		Potri.004G193400 [exp]	5.47	0.9906
AT3G12900			2-oxoglutarate (2OG) and Fe(II...		Potri.005G097900 [exp]	6.32	0.9940
AT1G65570			Pectin lyase-like superfamily ...		Potri.010G177501 [exp]	6.92	0.9892
AT4G19690		ATIRT1, IRT1	ARABIDOPSIS IRON-REGULATED TRA...		Potri.015G117900 [exp]	7.07	0.9936	Pt-ZIP6.4
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181100 [exp]	7.74	0.9930	Pt-NRAMP1.4
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181000 [exp]	9.38	0.9928
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166666 [exp]	10.00	0.9689
AT1G31260		ZIP10	zinc transporter 10 precursor ...		Potri.015G117700 [exp]	13.03	0.9818

Compare expression of checked genes

Potri.001G006901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.